Center for Computational Toxicology and Exposure, US Environmental Protection Agency, Research Triangle Park, NC, USA.
Oak Ridge Institute for Science and Education (ORISE) fellow at the Center for Public Health and Environmental Assessment, Research Triangle Park, NC, USA.
J Expo Sci Environ Epidemiol. 2022 Nov;32(6):855-863. doi: 10.1038/s41370-022-00491-0. Epub 2022 Nov 3.
Toxicokinetic (TK) data needed for chemical risk assessment are not available for most chemicals. To support a greater number of chemicals, the U.S. Environmental Protection Agency (EPA) created the open-source R package "httk" (High Throughput ToxicoKinetics). The "httk" package provides functions and data tables for simulation and statistical analysis of chemical TK, including a population variability simulator that uses biometrics data from the National Health and Nutrition Examination Survey (NHANES).
Here we modernize the "HTTK-Pop" population variability simulator based on the currently available data and literature. We provide explanations of the algorithms used by "httk" for variability simulation and uncertainty propagation.
We updated and revised the population variability simulator in the "httk" package with the most recent NHANES biometrics (up to the 2017-18 NHANES cohort). Model equations describing glomerular filtration rate (GFR) were revised to more accurately represent physiology and population variability. The model output from the updated "httk" package was compared with the current version.
The revised population variability simulator in the "httk" package now provides refined, more relevant, and better justified estimations.
Fulfilling the U.S. EPA's mission to provide open-source data and models for evaluations and applications by the broader scientific community, and continuously improving the accuracy of the "httk" package based on the currently available data and literature.
大多数化学物质的毒代动力学 (TK) 数据都无法用于化学风险评估。为了支持更多的化学物质,美国环境保护署 (EPA) 创建了开源 R 包“httk”(高通量毒代动力学)。“httk”包提供了用于化学 TK 模拟和统计分析的功能和数据表,包括一个使用来自国家健康和营养检查调查 (NHANES) 的生物统计学数据的群体变异性模拟器。
在此,我们基于现有数据和文献,对“HTTK-Pop”群体变异性模拟器进行了现代化改造。我们解释了“httk”用于变异性模拟和不确定性传播的算法。
我们使用最新的 NHANES 生物统计学(截至 2017-18 年 NHANES 队列)更新和修订了“httk”包中的群体变异性模拟器。修订了描述肾小球滤过率 (GFR) 的模型方程,以更准确地反映生理学和群体变异性。比较了更新后的“httk”包的模型输出与当前版本。
“httk”包中的修订后的群体变异性模拟器现在提供了更精细、更相关和更合理的估计。
满足美国环保署的使命,为更广泛的科学界提供开放源码数据和模型,用于评估和应用,并根据现有数据和文献不断提高“httk”包的准确性。