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泛癌转录组分析确定关键的PAN凋亡标志物作为肿瘤学的治疗靶点。

Pancancer transcriptomic profiling identifies key PANoptosis markers as therapeutic targets for oncology.

作者信息

Mall Raghvendra, Bynigeri Ratnakar R, Karki Rajendra, Malireddi R K Subbarao, Sharma Bhesh Raj, Kanneganti Thirumala-Devi

机构信息

Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

出版信息

NAR Cancer. 2022 Nov 1;4(4):zcac033. doi: 10.1093/narcan/zcac033. eCollection 2022 Dec.

Abstract

Resistance to programmed cell death (PCD) is a hallmark of cancer. While some PCD components are prognostic in cancer, the roles of many molecules can be masked by redundancies and crosstalks between PCD pathways, impeding the development of targeted therapeutics. Recent studies characterizing these redundancies have identified PANoptosis, a unique innate immune-mediated inflammatory PCD pathway that integrates components from other PCD pathways. Here, we designed a systematic computational framework to determine the pancancer clinical significance of PANoptosis and identify targetable biomarkers. We found that high expression of PANoptosis genes was detrimental in low grade glioma (LGG) and kidney renal cell carcinoma (KIRC). and expression consistently had negative effects on prognosis in LGG across multiple survival models, while and expression had negative effects for KIRC. Conversely, high expression of PANoptosis genes was beneficial in skin cutaneous melanoma (SKCM), with and expression consistently having positive prognostic effects. As a therapeutic proof-of-concept, we treated melanoma cells with combination therapy that activates ZBP1 and showed that this treatment induced PANoptosis. Overall, through our systematic framework, we identified and validated key innate immune biomarkers from PANoptosis which can be targeted to improve patient outcomes in cancers.

摘要

对程序性细胞死亡(PCD)的抗性是癌症的一个标志。虽然一些PCD成分在癌症中具有预后价值,但PCD途径之间的冗余和串扰可能掩盖许多分子的作用,阻碍靶向治疗药物的开发。最近对这些冗余进行表征的研究确定了泛凋亡,这是一种独特的由先天免疫介导的炎症性PCD途径,整合了来自其他PCD途径的成分。在这里,我们设计了一个系统的计算框架,以确定泛凋亡在泛癌中的临床意义,并识别可靶向的生物标志物。我们发现,泛凋亡基因的高表达在低级别胶质瘤(LGG)和肾透明细胞癌(KIRC)中是有害的。在多个生存模型中,[具体基因1]和[具体基因2]的表达对LGG的预后始终具有负面影响,而[具体基因3]和[具体基因4]的表达对KIRC有负面影响。相反,泛凋亡基因的高表达在皮肤黑色素瘤(SKCM)中是有益的,[具体基因5]和[具体基因6]的表达始终具有积极的预后作用。作为治疗概念验证,我们用激活ZBP1的联合疗法治疗黑色素瘤细胞,结果表明这种治疗诱导了泛凋亡。总体而言,通过我们的系统框架,我们从泛凋亡中鉴定并验证了关键的先天免疫生物标志物,这些标志物可作为靶点来改善癌症患者的预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5713/9623737/146c1f2f1a21/zcac033figgra1.jpg

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