• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用CRISPR技术研究病毒与宿主的相互作用。

Studying Virus-Host Interactions with CRISPR Technology.

作者信息

Zhang Rong

机构信息

Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), Shanghai Institute of Infectious Disease and Biosecurity, School of Basic Medical Sciences, Shanghai Medical College, Fudan University, Shanghai, China.

出版信息

Methods Mol Biol. 2023;2585:105-117. doi: 10.1007/978-1-0716-2760-0_11.

DOI:10.1007/978-1-0716-2760-0_11
PMID:36331769
Abstract

The mosquito-borne West Nile virus (WNV) poses a great threat to public health as no vaccine or specific antiviral treatment is available. Exploring virus-host interactions, specifically host factors that are required for virus infection, is important for better understanding the biology, pathogenesis, and transmission of WNV. Such essential host factors may also represent antiviral targets. The development of CRISPR technology has provided a powerful and convenient tool to perturbate host gene expression, allowing for unbiased, genome-wide screens of host factors for virus infection. Here we describe the necessary steps for performing a CRISPR knockout screen, which can also be applied to other viruses, to identify host factors critical for WNV infection.

摘要

蚊媒传播的西尼罗河病毒(WNV)对公共卫生构成了巨大威胁,因为目前尚无疫苗或特异性抗病毒治疗方法。探索病毒与宿主的相互作用,特别是病毒感染所需的宿主因子,对于更好地理解WNV的生物学特性、发病机制和传播至关重要。这些必需的宿主因子也可能代表抗病毒靶点。CRISPR技术的发展提供了一个强大且便捷的工具来干扰宿主基因表达,从而能够对病毒感染的宿主因子进行无偏倚的全基因组筛选。在此,我们描述了进行CRISPR基因敲除筛选的必要步骤,该步骤也可应用于其他病毒,以鉴定对WNV感染至关重要的宿主因子。

相似文献

1
Studying Virus-Host Interactions with CRISPR Technology.利用CRISPR技术研究病毒与宿主的相互作用。
Methods Mol Biol. 2023;2585:105-117. doi: 10.1007/978-1-0716-2760-0_11.
2
A CRISPR toolbox to study virus-host interactions.用于研究病毒-宿主相互作用的CRISPR工具集。
Nat Rev Microbiol. 2017 Jun;15(6):351-364. doi: 10.1038/nrmicro.2017.29. Epub 2017 Apr 19.
3
Flavivirus-Host Interaction Landscape Visualized through Genome-Wide CRISPR Screens.通过全基因组 CRISPR 筛选可视化黄病毒-宿主相互作用全景图。
Viruses. 2022 Sep 30;14(10):2164. doi: 10.3390/v14102164.
4
Systematic review and meta-analysis of genome-wide pooled CRISPR screens to identify host factors involved in influenza A virus infection.系统评价和荟萃分析全基因组 CRISPR 筛选以鉴定参与甲型流感病毒感染的宿主因素。
J Virol. 2024 May 14;98(5):e0185723. doi: 10.1128/jvi.01857-23. Epub 2024 Apr 3.
5
Human MicroRNA miR-532-5p Exhibits Antiviral Activity against West Nile Virus via Suppression of Host Genes SESTD1 and TAB3 Required for Virus Replication.人类微小RNA miR-532-5p通过抑制病毒复制所需的宿主基因SESTD1和TAB3表现出对西尼罗河病毒的抗病毒活性。
J Virol. 2015 Dec 16;90(5):2388-402. doi: 10.1128/JVI.02608-15.
6
Genome-Wide CRISPR Screen Identifies RACK1 as a Critical Host Factor for Flavivirus Replication.全基因组 CRISPR 筛选鉴定 RACK1 为黄病毒复制的关键宿主因子。
J Virol. 2021 Nov 23;95(24):e0059621. doi: 10.1128/JVI.00596-21. Epub 2021 Sep 29.
7
Noncoding Subgenomic Flavivirus RNA Is Processed by the Mosquito RNA Interference Machinery and Determines West Nile Virus Transmission by Culex pipiens Mosquitoes.非编码亚基因组黄病毒RNA由蚊子的RNA干扰机制加工,并决定西尼罗河病毒通过致倦库蚊的传播。
J Virol. 2016 Oct 28;90(22):10145-10159. doi: 10.1128/JVI.00930-16. Print 2016 Nov 15.
8
A CRISPR Activation Screen Identifies Genes That Protect against Zika Virus Infection.CRISPR 激活筛选鉴定出抵抗寨卡病毒感染的基因。
J Virol. 2019 Jul 30;93(16). doi: 10.1128/JVI.00211-19. Print 2019 Aug 15.
9
West Nile Virus-Inclusive Single-Cell RNA Sequencing Reveals Heterogeneity in the Type I Interferon Response within Single Cells.西尼罗河病毒全基因组单细胞 RNA 测序揭示了单个细胞中 I 型干扰素反应的异质性。
J Virol. 2019 Mar 5;93(6). doi: 10.1128/JVI.01778-18. Print 2019 Mar 15.
10
The Immune Responses of the Animal Hosts of West Nile Virus: A Comparison of Insects, Birds, and Mammals.西尼罗河病毒宿主动物的免疫反应:昆虫、鸟类和哺乳动物的比较。
Front Cell Infect Microbiol. 2018 Apr 3;8:96. doi: 10.3389/fcimb.2018.00096. eCollection 2018.

本文引用的文献

1
Protocadherin-1 is essential for cell entry by New World hantaviruses.原钙黏蛋白-1 对于新型布尼亚病毒的细胞进入是必需的。
Nature. 2018 Nov;563(7732):559-563. doi: 10.1038/s41586-018-0702-1. Epub 2018 Nov 21.
2
A CRISPR Activation Screen Identifies a Pan-avian Influenza Virus Inhibitory Host Factor.一项CRISPR激活筛选鉴定出一种泛禽流感病毒抑制性宿主因子。
Cell Rep. 2017 Aug 15;20(7):1503-1512. doi: 10.1016/j.celrep.2017.07.060.
3
A CRISPR toolbox to study virus-host interactions.用于研究病毒-宿主相互作用的CRISPR工具集。
Nat Rev Microbiol. 2017 Jun;15(6):351-364. doi: 10.1038/nrmicro.2017.29. Epub 2017 Apr 19.
4
Systematic comparison of CRISPR/Cas9 and RNAi screens for essential genes.对用于必需基因的CRISPR/Cas9和RNA干扰筛选进行系统比较。
Nat Biotechnol. 2016 Jun;34(6):634-6. doi: 10.1038/nbt.3567. Epub 2016 May 9.
5
CRISPR knockout screening outperforms shRNA and CRISPRi in identifying essential genes.CRISPR 敲除筛选在鉴定必需基因方面优于 shRNA 和 CRISPRi。
Nat Biotechnol. 2016 Jun;34(6):631-3. doi: 10.1038/nbt.3536. Epub 2016 Apr 25.
6
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.优化sgRNA设计以最大化CRISPR-Cas9的活性并最小化脱靶效应。
Nat Biotechnol. 2016 Feb;34(2):184-191. doi: 10.1038/nbt.3437. Epub 2016 Jan 18.
7
The global ecology and epidemiology of West Nile virus.西尼罗河病毒的全球生态学与流行病学
Biomed Res Int. 2015;2015:376230. doi: 10.1155/2015/376230. Epub 2015 Mar 19.
8
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.全基因组规模的CRISPR介导的基因抑制与激活控制
Cell. 2014 Oct 23;159(3):647-61. doi: 10.1016/j.cell.2014.09.029. Epub 2014 Oct 9.
9
Virus entry. Lassa virus entry requires a trigger-induced receptor switch.病毒进入。拉沙病毒进入需要触发诱导的受体开关。
Science. 2014 Jun 27;344(6191):1506-10. doi: 10.1126/science.1252480.
10
Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library.利用慢病毒 CRISPR-guide RNA 文库对哺乳动物细胞进行全基因组隐性遗传筛选。
Nat Biotechnol. 2014 Mar;32(3):267-73. doi: 10.1038/nbt.2800. Epub 2013 Dec 23.