• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

元水平基因水平转移:用于异构信息网络嵌入的元路径感知超图变换器

Meta-HGT: Metapath-aware HyperGraph Transformer for heterogeneous information network embedding.

作者信息

Liu Jie, Song Lingyun, Wang Guangtao, Shang Xuequn

机构信息

School of Computer Science, Northwestern Polytechnical University, Xi'an, 710000, China; Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an, 710000, China.

School of Computer Science, Northwestern Polytechnical University, Xi'an, 710000, China; Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an, 710000, China.

出版信息

Neural Netw. 2023 Jan;157:65-76. doi: 10.1016/j.neunet.2022.08.028. Epub 2022 Sep 22.

DOI:10.1016/j.neunet.2022.08.028
PMID:36334540
Abstract

Heterogeneous information network embedding aims to learn low-dimensional node vectors in heterogeneous information networks (HINs), concerning not only structural information but also heterogeneity of diverse node and relation types. Most existing HIN embedding models mainly rely on metapath to define composite relations between node pairs and thus extract substructures from the original HIN. However, due to the pairwise structure of metapath, these models fail to capture the high-order relations (such as "Multiple authors co-authoring a paper") implicitly contained in HINs. To tackle the limitation, this paper proposes a Metapath-aware HyperGraph Transformer (Meta-HGT) for node embedding in HINs. Meta-HGT first extends metapath to guide the high-order relation extraction from original HIN and constructs multiple metapath based hypergraphs with diverse composite semantics. Then, Meta-HGT learns the latent node and hyperedge embeddings in each metapath based hypergraph through Meta-HGT layers. Each layer consists of two types of components, i.e., intra-hyperedge aggregation and inter-hyperedge aggregation, in which a novel type-dependent attention mechanism is proposed for node and hyperedge feature aggregation. Finally, it fuses multiple node embeddings learned from different metapath based hypergraphs via a semantic attention layer and generates the final node embeddings. Extensive experiments have been conducted on three HIN benchmarks for node classification. The results demonstrate that Meta-HGT achieves state-of-the-art performance on all three datasets.

摘要

异质信息网络嵌入旨在在异质信息网络(HIN)中学习低维节点向量,不仅考虑结构信息,还考虑不同节点和关系类型的异质性。大多数现有的HIN嵌入模型主要依靠元路径来定义节点对之间的复合关系,从而从原始HIN中提取子结构。然而,由于元路径的成对结构,这些模型无法捕捉HIN中隐含的高阶关系(如“多位作者共同撰写一篇论文”)。为了解决这一局限性,本文提出了一种用于HIN中节点嵌入的元路径感知超图变换器(Meta-HGT)。Meta-HGT首先扩展元路径以指导从原始HIN中提取高阶关系,并构建具有不同复合语义的多个基于元路径的超图。然后,Meta-HGT通过Meta-HGT层学习每个基于元路径的超图中的潜在节点和超边嵌入。每一层由两种类型的组件组成,即超边内聚合和超边间聚合,其中提出了一种新颖的依赖类型的注意力机制用于节点和超边特征聚合。最后,它通过语义注意力层融合从不同的基于元路径的超图中学习到的多个节点嵌入,并生成最终的节点嵌入。针对节点分类在三个HIN基准上进行了广泛的实验。结果表明,Meta-HGT在所有三个数据集上都取得了领先的性能。

相似文献

1
Meta-HGT: Metapath-aware HyperGraph Transformer for heterogeneous information network embedding.元水平基因水平转移:用于异构信息网络嵌入的元路径感知超图变换器
Neural Netw. 2023 Jan;157:65-76. doi: 10.1016/j.neunet.2022.08.028. Epub 2022 Sep 22.
2
MHTAN-DTI: Metapath-based hierarchical transformer and attention network for drug-target interaction prediction.MHTAN-DTI:基于元路径的分层变压器和注意力网络用于药物-靶点相互作用预测。
Brief Bioinform. 2023 Mar 19;24(2). doi: 10.1093/bib/bbad079.
3
Heterogeneous Hypergraph Variational Autoencoder for Link Prediction.用于链路预测的异质超图变分自编码器
IEEE Trans Pattern Anal Mach Intell. 2022 Aug;44(8):4125-4138. doi: 10.1109/TPAMI.2021.3059313. Epub 2022 Jul 1.
4
MECCH: Metapath Context Convolution-based Heterogeneous Graph Neural Networks.MECCH:基于元路径上下文卷积的异质图神经网络。
Neural Netw. 2024 Feb;170:266-275. doi: 10.1016/j.neunet.2023.11.030. Epub 2023 Nov 13.
5
Metapath Aggregated Graph Neural Network and Tripartite Heterogeneous Networks for Microbe-Disease Prediction.用于微生物-疾病预测的元路径聚合图神经网络和三方异构网络
Front Microbiol. 2022 May 31;13:919380. doi: 10.3389/fmicb.2022.919380. eCollection 2022.
6
Multiview hyperedge-aware hypergraph embedding learning for multisite, multiatlas fMRI based functional connectivity network analysis.用于基于多站点、多图谱功能磁共振成像的功能连接网络分析的多视图超边感知超图嵌入学习
Med Image Anal. 2024 May;94:103144. doi: 10.1016/j.media.2024.103144. Epub 2024 Mar 19.
7
Unsupervised Embedding Learning for Large-Scale Heterogeneous Networks Based on Metapath Graph Sampling.基于元路径图采样的大规模异构网络无监督嵌入学习
Entropy (Basel). 2023 Feb 4;25(2):297. doi: 10.3390/e25020297.
8
HeteEdgeWalk: A Heterogeneous Edge Memory Random Walk for Heterogeneous Information Network Embedding.异构边缘游走:用于异构信息网络嵌入的异构边缘记忆随机游走
Entropy (Basel). 2023 Jun 29;25(7):998. doi: 10.3390/e25070998.
9
A multi-view contrastive learning for heterogeneous network embedding.一种用于异质网络嵌入的多视图对比学习。
Sci Rep. 2023 Apr 25;13(1):6732. doi: 10.1038/s41598-023-33324-7.
10
Learning global dependencies and multi-semantics within heterogeneous graph for predicting disease-related lncRNAs.学习异质图中的全局依赖关系和多语义关系,以预测与疾病相关的 lncRNAs。
Brief Bioinform. 2022 Sep 20;23(5). doi: 10.1093/bib/bbac361.

引用本文的文献

1
Therapeutic gene target prediction using novel deep hypergraph representation learning.使用新型深度超图表示学习进行治疗性基因靶点预测。
Brief Bioinform. 2024 Nov 22;26(1). doi: 10.1093/bib/bbaf019.