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局部振动模式理论及其在振动光谱领域中的地位。

The Local Vibrational Mode Theory and Its Place in the Vibrational Spectroscopy Arena.

作者信息

Kraka Elfi, Quintano Mateus, La Force Hunter W, Antonio Juliana J, Freindorf Marek

机构信息

Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave, Dallas, Texas75275-0314, United States.

出版信息

J Phys Chem A. 2022 Dec 1;126(47):8781-8798. doi: 10.1021/acs.jpca.2c05962. Epub 2022 Nov 8.

Abstract

This Feature Article starts highlighting some recent experimental and theoretical advances in the field of IR and Raman spectroscopy, giving a taste of the breadth and dynamics of this striving field. The local mode theory is then reviewed, showing how local vibrational modes are derived from fundamental normal modes. New features are introduced that add to current theoretical efforts: (i) a unique measure of bond strength based on local mode force constants ranging from bonding in single molecules in different environments to bonding in periodic systems and crystals and (ii) a new way to interpret vibrational spectra by pinpointing and probing interactions between particular bond stretching contributions to the normal modes. All of this represents a means to work around the very nature of normal modes, namely that the vibrational motions in polyatomic molecules are delocalized. Three current focus points of the local mode analysis are reported, demonstrating how the local mode analysis extracts important information hidden in vibrational spectroscopy data supporting current experiments: (i) metal-ligand bonding in heme proteins, such as myoglobin and neuroglobin; (ii) disentanglement of DNA normal modes; and (iii) hydrogen bonding in water clusters and ice. Finally, the use of the local mode analysis by other research groups is summarized. Our vision is that in the future local mode analysis will be routinely applied by the community and that this Feature Article serves as an incubator for future collaborations between experiment and theory.

摘要

这篇专题文章首先着重介绍了红外光谱和拉曼光谱领域近期的一些实验和理论进展,让读者领略这个蓬勃发展领域的广度和活力。接着回顾了局域模理论,展示了局域振动模式是如何从基本正则模式推导出来的。文章还引入了一些新特性,为当前的理论研究增添了内容:(i)基于局域模力常数的一种独特的键强度量方法,其范围涵盖从不同环境下单分子中的键合到周期性体系和晶体中的键合;(ii)一种通过精确确定和探究正则模式中特定键伸缩贡献之间的相互作用来解释振动光谱的新方法。所有这些都代表了一种绕过正则模式本质的手段,即多原子分子中的振动运动是离域的。文章报道了局域模分析当前的三个重点研究方向,展示了局域模分析如何从支持当前实验的振动光谱数据中提取隐藏的重要信息:(i)血红素蛋白(如肌红蛋白和神经球蛋白)中的金属 - 配体键合;(ii)解开DNA正则模式;(iii)水簇和冰中的氢键。最后,总结了其他研究小组对局域模分析的应用情况。我们期望在未来,局域模分析将被该领域广泛应用,并且这篇专题文章能成为未来实验与理论合作的孵化器。

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