Xie Yalun, Han Shaoqing, Li Qiming, Fang Zhentian, Yang Wei, Wei Qi, Wang Yafen, Zhou Yu, Weng Xiaocheng, Zhou Xiang
College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University Wuhan China
College of Life Science, Wuhan University Wuhan Hubei China.
Chem Sci. 2022 Oct 5;13(41):12149-12157. doi: 10.1039/d2sc03181g. eCollection 2022 Oct 26.
Studies of chemical modifications on RNA have ushered in the field of epitranscriptomics. -Methyladenosine (mA) is the most typical RNA modification and is indispensable for basic biological processes. This study presents a chemical pulldown method (mA-ORL-Seq) for transcriptome-wide profiling of mA. Moreover, chemical labeling results in a specific reverse transcription (RT) truncation signature. This study has identified four thousand high-confidence mA sites at single-base resolution in the human transcriptome. Unlike previously reported methods based on mA-antibody or mA-sensitive enzymes, the antibody/enzyme-free chemical method provides a new perspective for single-base mA detection at the transcriptome level.
对RNA进行化学修饰的研究开创了表观转录组学领域。N6-甲基腺苷(m⁶A)是最典型的RNA修饰,对基本生物学过程不可或缺。本研究提出了一种用于全转录组范围m⁶A谱分析的化学下拉方法(m⁶A-ORL-Seq)。此外,化学标记会产生特定的逆转录(RT)截断特征。本研究在人类转录组中以单碱基分辨率鉴定出4000个高可信度的m⁶A位点。与先前报道的基于m⁶A抗体或m⁶A敏感酶的方法不同,这种无抗体/酶的化学方法为转录组水平上单碱基m⁶A检测提供了新视角。