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基因组挖掘揭示了生物防治剂 B.BV10 的高生物合成潜力。

Genome Mining Reveals High Biosynthetic Potential of Biocontrol Agent B.BV10.

机构信息

Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil.

Computer Science Department, Universidade Tecnológica Federal do Paraná, Cornélio Procópio 86300000, PR, Brazil.

出版信息

Genes (Basel). 2022 Oct 30;13(11):1984. doi: 10.3390/genes13111984.

DOI:10.3390/genes13111984
PMID:36360221
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9690179/
Abstract

The present study demonstrates the biocontrol potential of a plant growth-promoting bacterial strain using three different approaches: (i) an in vitro evaluation of antagonistic activity against important phytopathogenic fungi; (ii) an evaluation under greenhouse conditions with strawberry plants to assess the control of gray mold; and (iii) an in silico whole genome sequence mining to assign genetic features such as gene clusters or isolated genes to the strain activity. The in vitro assay showed that the B.BV10 strain presented antagonistic activity, inhibiting the mycelial growth in all the phytopathogenic fungi evaluated. The application of the strain B.BV10 under greenhouse conditions reduced the presence of and increased the mean fruit biomass. The genome of B.BV10 was estimated at 3,917,533 bp, with a GC content of 46.6% and 4088 coding DNA sequences, and was identified as . Biosynthetic gene clusters related to the synthesis of the molecules with antifungal activity were found in its genome. Genes related to the regulation/formation of biofilms, motility, and the important properties for the rhizospheric colonization were also found in the genome. The current study offers a comprehensive understanding of the genomic architecture and control activity of phytopathogenic fungi by the strain B.BV10 that may substantiate the industrialization of this strain in the future.

摘要

本研究采用三种不同方法展示了一株具有植物促生作用的细菌的生防潜力

(i)体外评估其对重要植物病原菌的拮抗活性;(ii)在温室条件下用草莓植物评估对灰霉病的防治效果;(iii)通过全基因组序列挖掘进行计算机模拟,以确定菌株活性相关的遗传特征,如基因簇或分离基因。体外试验表明,B.BV10 菌株具有拮抗活性,能抑制所有评估的植物病原菌的菌丝生长。在温室条件下应用 B.BV10 菌株降低了 的存在并增加了平均果实生物量。B.BV10 的基因组估计为 3,917,533 bp,GC 含量为 46.6%,包含 4,088 个编码 DNA 序列,被鉴定为. 在其基因组中发现了与合成具有抗真菌活性的分子相关的生物合成基因簇。在基因组中还发现了与生物膜的调控/形成、运动以及根际定殖的重要特性相关的基因。本研究全面了解了 B.BV10 菌株对植物病原菌的基因组结构和控制活性,这可能为该菌株未来的产业化提供依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/93c5517ce0fe/genes-13-01984-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/4098f3afa2db/genes-13-01984-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/53b8b19d338a/genes-13-01984-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/d80696e0a6ff/genes-13-01984-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/2cf70f241070/genes-13-01984-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/7ea59bdee6c2/genes-13-01984-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/e285aa5f93c8/genes-13-01984-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/3c85199b191a/genes-13-01984-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/93c5517ce0fe/genes-13-01984-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/4098f3afa2db/genes-13-01984-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/53b8b19d338a/genes-13-01984-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/d80696e0a6ff/genes-13-01984-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/2cf70f241070/genes-13-01984-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/7ea59bdee6c2/genes-13-01984-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/e285aa5f93c8/genes-13-01984-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/3c85199b191a/genes-13-01984-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6183/9690179/93c5517ce0fe/genes-13-01984-g008.jpg

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