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在芽孢杆菌中工程化全局转录因子:提高产物产量的遗传工具:一个生物工艺概述。

Engineering of global transcription factors in Bacillus, a genetic tool for increasing product yields: a bioprocess overview.

机构信息

Centro de Investigación en Biotecnología Aplicada del Instituto Politécnico Nacional, Carretera Estatal Santa Inés Tecuexcomac-Tepetitla, Km 1.5, C.P. 90700, Tepetitla de Lardizábal, Tlaxcala, Mexico.

Unidad Profesional Interdisciplinaria de Ingeniería Campus Tlaxcala del Instituto Politécnico Nacional, CP 90000, Guillermo Valle, Tlaxcala, Mexico.

出版信息

World J Microbiol Biotechnol. 2022 Nov 14;39(1):12. doi: 10.1007/s11274-022-03460-9.

Abstract

Transcriptional factors are well studied in bacteria for their global interactions and the effects they produce at the phenotypic level. Particularly, Bacillus subtilis has been widely employed as a model Gram-positive microorganism used to characterize these network interactions. Bacillus species are currently used as efficient commercial microbial platforms to produce diverse metabolites such as extracellular enzymes, antibiotics, surfactants, industrial chemicals, heterologous proteins, among others. However, the pleiotropic effects caused by the genetic modification of specific genes that codify for global regulators (transcription factors) have not been implicated commonly from a bioprocess point of view. Recently, these strategies have attracted the attention in Bacillus species because they can have an application to increase production efficiency of certain commercial interest metabolites. In this review, we update the recent advances that involve this trend in the use of genetic engineering (mutations, deletion, or overexpression) performed to global regulators such as Spo0A, CcpA, CodY and AbrB, which can provide an advantage for the development or improvement of bioprocesses that involve Bacillus species as production platforms. Genetic networks, regulation pathways and their relationship to the development of growth stages are also discussed to correlate the interactions that occur between these regulators, which are important to consider for application in the improvement of commercial-interest metabolites. Reported yields from these products currently produced mostly under laboratory conditions and, in a lesser extent at bioreactor level, are also discussed to give valuable perspectives about their potential use and developmental level directed to process optimization at large-scale.

摘要

转录因子在细菌中因其全局相互作用及其在表型水平上产生的影响而得到深入研究。特别是,枯草芽孢杆菌被广泛用作革兰氏阳性微生物模型,用于表征这些网络相互作用。芽孢杆菌目前被用作高效的商业微生物平台,用于生产各种代谢物,如细胞外酶、抗生素、表面活性剂、工业化学品、异源蛋白等。然而,从生物工艺学的角度来看,遗传修饰特定基因(编码全局调节剂(转录因子))所引起的多效性效应尚未得到普遍涉及。最近,这些策略引起了芽孢杆菌物种的关注,因为它们可以应用于提高某些具有商业利益的代谢物的生产效率。在这篇综述中,我们更新了最近的进展,涉及到使用遗传工程(突变、缺失或过表达)对全局调节剂(如 Spo0A、CcpA、CodY 和 AbrB)的应用,这可以为涉及芽孢杆菌作为生产平台的生物工艺的开发或改进提供优势。还讨论了遗传网络、调控途径及其与生长阶段发展的关系,以关联这些调节剂之间发生的相互作用,这对于考虑在改善商业利益代谢物方面的应用非常重要。还讨论了目前主要在实验室条件下和在较小程度上在生物反应器水平下生产的这些产品的报告产量,以提供关于其潜在用途和针对大规模过程优化的发展水平的有价值的观点。

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