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Sprouty4 在人类结直肠癌中呈表观遗传上调。

Sprouty4 is epigenetically upregulated in human colorectal cancer.

机构信息

Department of Medicine, Division of Gastroenterology and Hepatology, University of Missouri, Columbia, Missouri, 65212, USA.

Bond Life Sciences Center, University of Missouri, Columbia, Missouri, 65201, USA.

出版信息

Epigenetics. 2023 Dec;18(1):2145068. doi: 10.1080/15592294.2022.2145068. Epub 2022 Nov 16.

Abstract

Sprouty4 (SPRY4) has been frequently reported as a tumor suppressor and is therefore downregulated in various cancers. For the first time, we report that SPRY4 is epigenetically upregulated in colorectal cancer (CRC). In this study, we explored DNA methylation and hydroxymethylation levels of in CRC cells and patient samples and correlated these findings with mRNA and protein expression levels. Three loci within the promoter region of were evaluated for 5mC levels in CRC using the combined bisulfite restriction analysis. In addition, hydroxymethylation levels within were measured in CRC patients. Lastly, DNA methylation and mRNA expression data were extracted from CRC patients in multiple high-throughput data repositories like Gene Expression Omnibus and The Cancer Genome Atlas. Combined and analysis of promoter methylation levels of clearly demonstrates that the distal promoter region undergoes hypomethylation in CRC patients and is associated with increased expression. Moreover, a decrease in gene body hydroxymethylation and an increase in gene body methylation within the coding region of were found in CRC patients and correlated with increased expression. SPRY4 is epigenetically upregulated in CRC by promoter hypomethylation and hypermethylation within the gene body that warrants future investigation of atypical roles of this established tumor suppressor.

摘要

Sprouty4 (SPRY4) 常被报道为肿瘤抑制因子,因此在各种癌症中表达下调。我们首次报告 SPRY4 在结直肠癌 (CRC) 中表观遗传地上调。在这项研究中,我们探索了结直肠癌细胞和患者样本中 的 DNA 甲基化和羟甲基化水平,并将这些发现与 mRNA 和蛋白表达水平相关联。在 CRC 中使用联合亚硫酸氢盐限制分析评估了 启动子区域内的三个基因座的 5mC 水平。此外,在 CRC 患者中测量了 内的羟甲基化水平。最后,从 CRC 患者的多个高通量数据存储库(如基因表达综合数据库和癌症基因组图谱)中提取 DNA 甲基化和 mRNA 表达数据。 的启动子甲基化水平的组合分析清楚地表明,CRC 患者的远端启动子区域发生低甲基化,与表达增加相关。此外,在 CRC 患者中发现 基因体的羟甲基化减少和编码区的甲基化增加,并与表达增加相关。通过启动子低甲基化和基因体内的高甲基化使 SPRY4 在 CRC 中表观遗传地上调,这需要进一步研究这个已确立的肿瘤抑制因子的非典型作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19f6/9980603/c07ab73bb795/KEPI_A_2145068_F0001_B.jpg

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