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动物多倍体在全球的分布梯度。

Global gradients in the distribution of animal polyploids.

机构信息

Department of Biological Sciences, Auburn University, Auburn, AL 36849.

出版信息

Proc Natl Acad Sci U S A. 2022 Nov 29;119(48):e2214070119. doi: 10.1073/pnas.2214070119. Epub 2022 Nov 21.

DOI:10.1073/pnas.2214070119
PMID:36409908
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9860298/
Abstract

Whole genome duplications (WGDs) are one of the most dramatic mutations that can be found in nature. The effects of WGD vary dramatically but can have profound impacts on an organism's expression, cytotype, and phenotype, altering their evolutionary trajectory as a result. Despite the growing appreciation for the contribution of WGDs in animal evolution, the significant factors influencing how polyploid animal lineages are established and maintained are still not well understood. Many hypotheses have been proposed which predict how climate and environment may influence polyploid incidence and evolution. To test and distinguish between these hypotheses, I assembled a global dataset of polyploid occurrences in three animal clades (Amphibia, Actinopterygii, and Insecta). The dataset encompasses chromosomal, phylogenetic, environmental, and climatic data across 57,905 species in 2,223 terrestrial, freshwater, and marine ecoregions. My analysis reveals a strong latitudinal gradient in all three clades, with the tendency for polyploid taxa to occur more frequently at higher latitudes. Many variables were significant (phylogenetic ANOVA < 0.05 after Bonferroni correction) between polyploids and diploids across taxa, notably those pertaining to temperature dynamics and glaciation. Glaciation in particular appears to be the most significant driver of polyploidy in animals, as these models had the highest relative likelihoods consistently across clades. These results contribute to a model of evolution wherein the broader genomic toolkit of polyploids facilitates adaptation and ecological resilience, enabling polyploids to colonize new or rapidly changing environments.

摘要

全基因组加倍 (WGD) 是自然界中最显著的突变之一。WGD 的影响差异很大,但会对生物体的表达、细胞型和表型产生深远影响,从而改变其进化轨迹。尽管人们越来越认识到 WGD 在动物进化中的贡献,但影响多倍体动物谱系建立和维持的重要因素仍未得到很好的理解。许多假说预测了气候和环境如何影响多倍体的发生和进化。为了检验和区分这些假说,我在三个动物类群(两栖动物、硬骨鱼和昆虫)中组装了一个全球多倍体发生数据集。该数据集涵盖了跨越 2223 个陆地、淡水和海洋生态区的 57905 个物种的染色体、系统发育、环境和气候数据。我的分析揭示了所有三个类群中都存在强烈的纬度梯度,多倍体类群在较高纬度上更频繁地发生。在分类群中,许多变量在多倍体和二倍体之间具有显著差异(经过 Bonferroni 校正后的系统发育方差分析 < 0.05),特别是与温度动态和冰川作用相关的变量。冰川作用似乎是动物多倍体的最重要驱动因素,因为这些模型在所有类群中始终具有最高的相对可能性。这些结果为一个进化模型做出了贡献,其中多倍体更广泛的基因组工具包促进了适应性和生态弹性,使多倍体能够在新的或快速变化的环境中殖民。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d5/9860298/6ffca334f5f8/pnas.2214070119fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d5/9860298/e021cc825871/pnas.2214070119fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d5/9860298/bca870425f5e/pnas.2214070119fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d5/9860298/6ffca334f5f8/pnas.2214070119fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d5/9860298/e021cc825871/pnas.2214070119fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d5/9860298/bca870425f5e/pnas.2214070119fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d5/9860298/6ffca334f5f8/pnas.2214070119fig03.jpg

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