Department of Integrative Biology, University of Texas at Austin, Austin, TX 78712.
Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.
Proc Natl Acad Sci U S A. 2022 Apr 12;119(15):e2118879119. doi: 10.1073/pnas.2118879119. Epub 2022 Apr 4.
Polyploidy results from whole-genome duplication and is a unique form of heritable variation with pronounced evolutionary implications. Different ploidy levels, or cytotypes, can exist within a single species, and such systems provide an opportunity to assess how ploidy variation alters phenotypic novelty, adaptability, and fitness, which can, in turn, drive the development of unique ecological niches that promote the coexistence of multiple cytotypes. Switchgrass, Panicum virgatum, is a widespread, perennial C4 grass in North America with multiple naturally occurring cytotypes, primarily tetraploids (4×) and octoploids (8×). Using a combination of genomic, quantitative genetic, landscape, and niche modeling approaches, we detect divergent levels of genetic admixture, evidence of niche differentiation, and differential environmental sensitivity between switchgrass cytotypes. Taken together, these findings support a generalist (8×)–specialist (4×) trade-off. Our results indicate that the 8× represent a unique combination of genetic variation that has allowed the expansion of switchgrass’ ecological niche and thus putatively represents a valuable breeding resource.
多倍体是由全基因组复制产生的,是一种具有显著进化意义的独特遗传变异形式。同一物种内可能存在不同的倍性水平或细胞型,而这些系统为评估多倍体变异如何改变表型新颖性、适应性和适合度提供了机会,这反过来又可以促进独特生态位的发展,从而促进多种细胞型的共存。柳枝稷(Panicum virgatum)是一种广泛分布的北美多年生 C4 草,具有多种自然发生的细胞型,主要是四倍体(4x)和八倍体(8x)。我们采用基因组、数量遗传学、景观和生态位模型相结合的方法,检测到柳枝稷细胞型之间存在不同程度的遗传混合、生态位分化的证据以及对环境的敏感性差异。总的来说,这些发现支持一般性(8x)-专门性(4x)的权衡。我们的研究结果表明,8x 代表了一种独特的遗传变异组合,这种组合使柳枝稷的生态位得以扩展,因此可能代表了一种有价值的育种资源。