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中国引起(沃柑)软腐病的 CL1 完整基因组序列资源。

Complete Genome Sequence Resource of CL1 Causing Soft Rot Disease in (Wampee) in China.

机构信息

Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou 510642, China.

出版信息

Plant Dis. 2023 May;107(5):1613-1616. doi: 10.1094/PDIS-10-22-2504-A. Epub 2023 May 18.

Abstract

CL1 is a causal agent of soft rot disease in (wampee) in China and has inhibitory activity against the bacterial wilt pathogen . Here we report the genome sequencing and analysis of CL1, representing the first complete genome resource of the species. The CL1 genome consists of four circular replicons (one chromosome and three plasmids), with a total size of 4,594,065 bp, and contains 4,109 protein-coding genes and 106 RNA genes. Our bioinformatic analysis of CL1 predicted 228 virulence factors, two Type VI Secretion Systems, and six secondary metabolite biosynthesis gene clusters producing saccharides, siderophores, and terpene. The complete genome sequence of CL1 provides a solid foundation for further investigation of its pathogenesis and antimicrobial activity and also represents a valuable resource for the comparative genomics of .

摘要

CL1 是中国(沃柑)软腐病的病原体,对青枯病菌具有抑制活性。在这里,我们报告了 CL1 的基因组测序和分析,这代表了该物种的首个完整基因组资源。CL1 基因组由四个环状复制子(一个染色体和三个质粒)组成,总大小为 4,594,065 bp,包含 4,109 个蛋白质编码基因和 106 个 RNA 基因。我们对 CL1 的生物信息学分析预测了 228 个毒力因子、两个 VI 型分泌系统和六个产生糖、铁载体和萜烯的次级代谢产物生物合成基因簇。CL1 的完整基因组序列为进一步研究其发病机制和抗菌活性提供了坚实的基础,也为 的比较基因组学提供了有价值的资源。

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