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通过达尔文进化增加宿主-寄生虫分子复制网络复杂性的合理途径。

Plausible pathway for a host-parasite molecular replication network to increase its complexity through Darwinian evolution.

机构信息

Department of Life Science, Graduate School of Arts and Science, The University of Tokyo, Tokyo, Japan.

JST, PRESTO, Kawaguchi, Saitama, Japan.

出版信息

PLoS Comput Biol. 2022 Dec 1;18(12):e1010709. doi: 10.1371/journal.pcbi.1010709. eCollection 2022 Dec.

DOI:10.1371/journal.pcbi.1010709
PMID:36454734
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9714742/
Abstract

How the complexity of primitive self-replication molecules develops through Darwinian evolution remains a mystery with regards to the origin of life. Theoretical studies have proposed that coevolution with parasitic replicators increases network complexity by inducing inter-dependent replication. Particularly, Takeuchi and Hogeweg proposed a complexification process of replicator networks by successive appearance of a parasitic replicator followed by the addition of a new host replicator that is resistant to the parasitic replicator. However, the feasibility of such complexification with biologically relevant molecules is still unknown owing to the lack of an experimental model. Here, we investigated the plausible complexification pathway of host-parasite replicators using both an experimental host-parasite RNA replication system and a theoretical model based on the experimental system. We first analyzed the parameter space that allows for sustainable replication in various replication networks ranging from a single molecule to three-member networks using computer simulation. The analysis shows that the most plausible complexification pathway from a single host replicator is the addition of a parasitic replicator, followed by the addition of a new host replicator that is resistant to the parasite, consistent with the previous study by Takeuchi and Hogeweg. We also provide evidence that the pathway actually occurred in our previous evolutionary experiment. These results provide experimental evidence that a population of a single replicator spontaneously evolves into multi-replicator networks through coevolution with parasitic replicators.

摘要

原始自我复制分子如何通过达尔文进化而变得复杂,这仍然是生命起源研究中的一个谜。理论研究提出,与寄生复制子的共同进化通过诱导相互依赖的复制来增加网络的复杂性。特别是,Takeuchi 和 Hogeweg 提出了一种通过连续出现寄生复制子,然后添加对寄生复制子具有抗性的新宿主复制子来实现复制子网络复杂化的过程。然而,由于缺乏实验模型,这种具有生物学相关性的分子的复杂形成的可行性仍然未知。在这里,我们使用实验宿主-寄生虫 RNA 复制系统和基于该实验系统的理论模型,研究了宿主-寄生虫复制子可能的复杂形成途径。我们首先使用计算机模拟分析了允许在各种复制网络中进行可持续复制的参数空间,这些网络范围从单个分子到三分子网络。分析表明,从单个宿主复制子最可能的复杂形成途径是添加寄生复制子,然后添加对寄生虫具有抗性的新宿主复制子,这与 Takeuchi 和 Hogeweg 的先前研究一致。我们还提供了证据表明该途径实际上在我们之前的进化实验中发生了。这些结果提供了实验证据,表明通过与寄生复制子的共同进化,单个复制子的种群可以自发进化为多复制子网络。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/ffd5270d243d/pcbi.1010709.g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/5423b467ecfe/pcbi.1010709.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/b8544135bfc7/pcbi.1010709.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/ca3c8d24e483/pcbi.1010709.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/9c0ef72c35b9/pcbi.1010709.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/d47539a4e845/pcbi.1010709.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/8d487d1afd2c/pcbi.1010709.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/013bcc16d029/pcbi.1010709.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/836177ffc16f/pcbi.1010709.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/ffd5270d243d/pcbi.1010709.g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/5423b467ecfe/pcbi.1010709.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/b8544135bfc7/pcbi.1010709.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/ca3c8d24e483/pcbi.1010709.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/9c0ef72c35b9/pcbi.1010709.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/d47539a4e845/pcbi.1010709.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/8d487d1afd2c/pcbi.1010709.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/013bcc16d029/pcbi.1010709.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/836177ffc16f/pcbi.1010709.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/216d/9714742/ffd5270d243d/pcbi.1010709.g009.jpg

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