Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University, Wuhan, 430072, People's Republic of China.
College of Computer Sciences, Wuhan University, Wuhan, 430072, People's Republic of China.
BMC Evol Biol. 2019 Apr 3;19(1):84. doi: 10.1186/s12862-019-1412-5.
It has long been suggested that Darwinian evolution may have started at the molecular level and subsequently proceeded to a level with membrane boundary, i.e., of protocells. The transformation has been referred to as "the first major transition leading to life". However, so far, we actually have little knowledge about the relevant evolutionary mechanisms - and even about the plausibility - of such a transition. Here, based upon the scenario of the RNA world, we performed a computer simulation study to address this issue.
First, it was shown that at the molecular level, after the spread of one ribozyme (RNA replicase), another ribozyme (nucleotide synthetase) may emerge naturally in the system, and the two ribozymes would cooperate to spread in the naked scene. Then, when empty vesicles absorb the two ribozymes via "cytophagy", the resulting protocells may spread in the system and substitute the naked ribozymes. As for the driven power of such a transition, it was demonstrated that the membrane boundary's roles to ensure the cooperation between the two ribozymes and to prevent invasion of parasites are important. Beyond that, remarkably, it was found that another two factors may also have been significant: a possibly higher mobility of the raw materials in the environment (free water) and the protocells' potential capability to move around actively. Finally, the permeability of the membrane to raw materials was shown to be a major problem regarding the disadvantage for the cellular form.
The transition from the molecular level to the cellular level may have occurred naturally in early history of evolution. The evolutionary mechanisms for this process were complex. Besides the membrane boundary's roles to guarantee the molecular cooperation and to resist parasites, the greater chance for the protocells to access raw materials - either due to the diffusion of raw materials outside or the protocells' active movement, should also be highlighted, which may have at least to an extent compensated the disadvantage regarding the membrane's blocking effect against raw materials. The present study represents an effort of systematical exploration on this significant transition during the arising of life.
长期以来,人们一直认为达尔文进化论可能首先在分子水平上开始,然后发展到具有膜边界的水平,即原细胞。这种转变被称为“导致生命的第一个重大转变”。然而,到目前为止,我们实际上对相关的进化机制,甚至对这种转变的合理性知之甚少。在这里,基于 RNA 世界的情景,我们进行了计算机模拟研究来解决这个问题。
首先,结果表明,在分子水平上,一种核酶(RNA 复制酶)扩散后,系统中可能会自然出现另一种核酶(核苷酸合成酶),并且这两种核酶会在裸场景中合作扩散。然后,当空泡通过“胞吞作用”吸收这两种核酶时,所得的原细胞可能会在系统中扩散并替代裸核酶。至于这种转变的驱动力,研究表明,膜边界的作用,确保两种核酶之间的合作,以及防止寄生虫的入侵,是非常重要的。除此之外,值得注意的是,另外两个因素也可能具有重要意义:环境(自由水)中原始材料可能具有更高的流动性,以及原细胞主动运动的潜在能力。最后,膜对原始材料的通透性是细胞形式的主要问题。
从分子水平到细胞水平的转变可能在进化的早期历史中自然发生。这个过程的进化机制很复杂。除了膜边界的作用,以保证分子的合作和抵抗寄生虫,原细胞获得原始材料的机会更大,这可能至少在一定程度上弥补了膜对原始材料的阻挡作用的劣势。本研究代表了对生命起源过程中这一重要转变的系统探索。