Gürler Zeynep, Gharsallaoui Mohammed Amine, Rekik Islem
BASIRA lab, Faculty of Computer and Informatics, Istanbul Technical University, Istanbul, Turkey.
BASIRA lab, Faculty of Computer and Informatics, Istanbul Technical University, Istanbul, Turkey; Ecole Polytechnique de Tunisie, Tunisia.
Comput Med Imaging Graph. 2023 Jan;103:102140. doi: 10.1016/j.compmedimag.2022.102140. Epub 2022 Nov 19.
Brain graphs are powerful representations to explore the biological roadmaps of the human brain in its healthy and disordered states. Recently, a few graph neural networks (GNNs) have been designed for brain connectivity synthesis and diagnosis. However, such non-Euclidean deep learning architectures might fail to capture the neural interactions between different brain regions as they are trained without guidance from any prior biological template-i.e., template-free learning. Here we assume that using a population-driven brain connectional template (CBT) that captures well the connectivity patterns fingerprinting a given brain state (e.g., healthy) can better guide the GNN training in its downstream learning task such as classification or regression. To this aim we design a plug-in graph registration network (GRN) that can be coupled with any conventional graph neural network (GNN) so as to boost its learning accuracy and generalizability to unseen samples. Our GRN is a graph generative adversarial network (gGAN), which registers brain graphs to a prior CBT. Next, the registered brain graphs are used to train typical GNN models. Our GRN can be integrated into any GNN working in an end-to-end fashion to boost its prediction accuracy. Our experiments showed that GRN remarkably boosted the prediction accuracy of four conventional GNN models across four neurological datasets.
脑图谱是探索人类大脑在健康和患病状态下生物学路线图的强大表示形式。最近,已经设计了一些图神经网络(GNN)用于脑连接性合成和诊断。然而,这种非欧几里得深度学习架构可能无法捕捉不同脑区之间的神经相互作用,因为它们在没有任何先验生物学模板指导的情况下进行训练,即无模板学习。在这里,我们假设使用一个群体驱动的脑连接模板(CBT),它能够很好地捕捉表征给定脑状态(例如健康状态)的连接模式,可以在诸如分类或回归等下游学习任务中更好地指导GNN训练。为此,我们设计了一个插件式图配准网络(GRN),它可以与任何传统的图神经网络(GNN)相结合,以提高其学习准确性和对未见样本的泛化能力。我们的GRN是一个图生成对抗网络(gGAN),它将脑图谱配准到一个先验CBT。接下来,配准后的脑图谱用于训练典型的GNN模型。我们的GRN可以集成到任何以端到端方式工作的GNN中,以提高其预测准确性。我们的实验表明,GRN显著提高了四个传统GNN模型在四个神经学数据集上的预测准确性。