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改善骨关节炎的机制:一项基于网络药理学的研究

The Mechanism by Which Ameliorates Osteoarthritis: A Work Based on Network Pharmacology.

作者信息

Du Min-Dong, He Kai-Yi, Fan Si-Qi, Li Jin-Yi, Liu Jin-Fu, Lei Zi-Qiang, Qin Gang

机构信息

Department of Osteoarthrosis, Xing-An Jieshou Orthopedics Hospital, Guilin, People's Republic of China.

Department of Orthopaedic Trauma and Hand Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, People's Republic of China.

出版信息

J Inflamm Res. 2024 Oct 29;17:7893-7912. doi: 10.2147/JIR.S483652. eCollection 2024.

Abstract

BACKGROUND

(CR) is widely used in traditional Chinese medicine to prevent and treat a variety of diseases. However, its functions and mechanism of action in osteoarthritis (OA) has not been elucidated. Here, a comprehensive strategy combining network pharmacology, molecular docking, molecular dynamics simulation and in vitro experiments was used to address this issue.

METHODS

The bioactive ingredients of CR were screened in TCMSP database, and the potential targets of these ingredients were obtained through Swiss Target Prediction database. Genes in OA pathogenesis were collected through GeneCards, OMIM and DisGeNET databases. Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed using DAVID database. STRING database and Cytoscape 3.10 software were used to construct "component-target-pathway" network, and predict the core targets affected by CR. The binding affinity between bioactive components and the core targets was evaluated by molecular docking and molecular dynamics simulation. The therapeutic activity of kaempferol on chondrocytes in inflammatory conditions was verified by in vitro experiments.

RESULTS

Fifteen CR bioactive ingredients were obtained, targeting 192 OA-related genes. A series of biological processes, cell components, molecular functions and pathways were predicted to be modulated by CR components. The core targets of CR in OA treatment were AKT serine/threonine kinase 1 (AKT1), interleukin 1 beta (IL1B), SRC proto-oncogene, non-receptor tyrosine kinase (SRC), BCL2 apoptosis regulator (BCL2), signal transducer and activator of transcription 3 (STAT3), epidermal growth factor receptor (EGFR), hypoxia-inducible factor 1 subunit alpha (HIF1A), matrix metallopeptidase 9 (MMP9), estrogen receptor 1 (ESR1) and PPARG orthologs from vertebrates (PPARG), and the main bioactive ingredients of CR showed good binding affinity with these targets. In addition, kaempferol, one of the CR bioactive components, weakens the effects of IL-1β on the viability, apoptosis and inflammation of chondrocytes.

CONCLUSION

Theoretically, CR has great potential to ameliorate the symptoms and progression of OA, via multiple components, multiple targets, and multiple downstream pathways.

摘要

背景

(CR)在传统中医中被广泛用于预防和治疗多种疾病。然而,其在骨关节炎(OA)中的作用和作用机制尚未阐明。在此,采用网络药理学、分子对接、分子动力学模拟和体外实验相结合的综合策略来解决这一问题。

方法

在中药系统药理学数据库(TCMSP)中筛选CR的生物活性成分,并通过瑞士靶点预测数据库获得这些成分的潜在靶点。通过基因卡片(GeneCards)、在线孟德尔人类遗传数据库(OMIM)和疾病基因数据库(DisGeNET)收集OA发病机制中的基因。使用DAVID数据库进行基因本体(GO)分析和京都基因与基因组百科全书(KEGG)富集分析。利用STRING数据库和Cytoscape 3.10软件构建“成分-靶点-通路”网络,并预测受CR影响的核心靶点。通过分子对接和分子动力学模拟评估生物活性成分与核心靶点之间的结合亲和力。通过体外实验验证山奈酚对炎症条件下软骨细胞的治疗活性。

结果

获得了15种CR生物活性成分,靶向192个与OA相关的基因。预测一系列生物学过程、细胞成分、分子功能和通路会受到CR成分的调节。CR在OA治疗中的核心靶点是AKT丝氨酸/苏氨酸激酶1(AKT1)、白细胞介素1β(IL1B)、原癌基因SRC、非受体酪氨酸激酶(SRC)、BCL2凋亡调节蛋白(BCL2)、信号转导和转录激活因子3(STAT3)、表皮生长因子受体(EGFR)、缺氧诱导因子1亚基α(HIF1A)、基质金属蛋白酶9(MMP9)、雌激素受体1(ESR1)和脊椎动物PPARG直系同源基因(PPARG),并且CR的主要生物活性成分与这些靶点表现出良好的结合亲和力。此外,CR生物活性成分之一山奈酚可减弱IL-1β对软骨细胞活力、凋亡和炎症的影响。

结论

从理论上讲,CR具有通过多种成分、多个靶点和多个下游通路改善OA症状和进展的巨大潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d916/11531273/0ea5cc19bc43/JIR-17-7893-g0001.jpg

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