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The emergence of SARS-CoV-2 Omicron subvariants: current situation and future trends.

作者信息

Farahat Ramadan Abdelmoez, Abdelaal Abdelaziz, Umar Tungki Pratama, El-Sakka Amro A, Benmelouka Amira Yasmine, Albakri Khaled, Ali Iftikhar, Al-Ahdal Tareq, Abdelazeem Basel, Sah Ranjit, Rodriguez-Morales Alfonso J

机构信息

Faculty of Medicine, Kafrelsheikh University, Kafrelsheikh, Egypt.

Harvard Medical School, Boston, MA, USA.

出版信息

Infez Med. 2022 Dec 1;30(4):480-494. doi: 10.53854/liim-3004-2. eCollection 2022.


DOI:10.53854/liim-3004-2
PMID:36482957
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9714996/
Abstract

The SARS-CoV-2 Omicron variant (B.1.1.529) has been the most recent variant of concern (VOC) established by the World Health Organization (WHO). Because of its greater infectivity and immune evasion, this variant quickly became the dominant type of circulating SARS-CoV-2 worldwide. Our literature review thoroughly explains the current state of Omicron emergence, particularly by comparing different omicron subvariants, including BA.2, BA.1, and BA.3. Such elaboration would be based on structural variations, mutations, clinical manifestation, transmissibility, pathogenicity, and vaccination effectiveness. The most notable difference between the three subvariants is the insufficiency of deletion (Δ69-70) in the spike protein, which results in a lower detection rate of the spike (S) gene target known as (S) gene target failure (SGTF). Furthermore, BA.2 had a stronger affinity to the human Angiotensin-converting Enzyme (hACE2) receptor than other Omicron sub-lineages. Regarding the number of mutations, BA.1.1 has the most (40), followed by BA.1, BA.3, and BA.3 with 39, 34, and 31 mutations, respectively. In addition, BA.2 and BA.3 have greater transmissibility than other sub-lineages (BA.1 and BA.1.1). These characteristics are primarily responsible for Omicron's vast geographical spread and high contagiousness rates, particularly BA.2 sub-lineages.

摘要

相似文献

[1]
The emergence of SARS-CoV-2 Omicron subvariants: current situation and future trends.

Infez Med. 2022-12-1

[2]
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[3]
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[7]
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[2]
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[3]
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[5]
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[6]
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[7]
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[10]
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本文引用的文献

[1]
First Imported Case of SARS-CoV-2 Omicron Subvariant BA.4 - Guangdong Province, China, May 4, 2022.

China CDC Wkly. 2022-10-7

[2]
Household transmission of SARS-CoV-2 Omicron variant of concern subvariants BA.1 and BA.2 in Denmark.

Nat Commun. 2022-9-30

[3]
Estimated Effectiveness of COVID-19 Vaccines Against Omicron or Delta Symptomatic Infection and Severe Outcomes.

JAMA Netw Open. 2022-9-1

[4]
First Imported Case of SARS-CoV-2 Omicron Subvariant BA.5 - Shanghai Municipality, China, May 13, 2022.

China CDC Wkly. 2022-7-29

[5]
The Omicron variant of concern: The genomics, diagnostics, and clinical characteristics in children.

Front Pediatr. 2022-8-2

[6]
Further implications on the global real-world vaccine effectiveness against SARS-CoV-2.

Expert Rev Vaccines. 2022-9

[7]
Estimating relative generation times and reproduction numbers of Omicron BA.1 and BA.2 with respect to Delta variant in Denmark.

Math Biosci Eng. 2022-6-21

[8]
Structural basis of human ACE2 higher binding affinity to currently circulating Omicron SARS-CoV-2 sub-variants BA.2 and BA.1.1.

Cell. 2022-8-4

[9]
OMICRON: Virology, immunopathogenesis, and laboratory diagnosis.

J Gene Med. 2022-7

[10]
The covid waves continue to come.

BMJ. 2022-6-17

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