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通过加权基因共表达网络分析(WGCNA)在急性心肌梗死中识别通过内皮细胞功能障碍诱导冠状动脉粥样硬化的关键基因 - 确定枢纽基因

Identification of crucial genes that induce coronary atherosclerosis through endothelial cell dysfunction in AMI-identifying hub genes by WGCNA.

作者信息

Xiao Sentong, Kuang Chunyan

机构信息

Department of Cardiovascular Diseases, Guizhou Provincial People's Hospital Nanming District, Guiyang 550003, Guizhou, People's Republic of China.

出版信息

Am J Transl Res. 2022 Nov 15;14(11):8166-8174. eCollection 2022.


DOI:
PMID:36505315
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9730117/
Abstract

OBJECTIVE: To identify the most relevant genes of cardiovascular disease in acute myocardial infarction patients using weighted gene co-expression network analysis (WGCNA). METHODS: The microarray dataset of GSE66360 was downloaded from the Gene Expression Omnibus (GEO) website. The differential genes with adjusted P < 0.05 and |log2 fold change (FC)| > 0.5 were included in the analysis. The weighed gene co-expression network analysis (WGCNA) was used to build a gene co-expression network and identify the most significant module. Cytoscape was used to filter the hub genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed for the hub genes. The key genes were defined as having high statistical and biological significance. RESULTS: A total of 4751 differentially expressed genes (DEGs) were screened from the dataset. The purple module had the highest significance in AMI. There were 47 hub genes identified from the module. The GO terms "amyloid beta protein metabolism" and "carbohydrate metabolism" and the KEGG terms "phagosome-related pathways" and "Staphylococcus aureus-associated pathways" were the pathways strongly enriched in AMI. Fatty acid translocase cluster of differentiation (CD36), formyl peptide receptor type 2 (FPR2), integrin subunit alpha M (ITGAM), and oxidized low density lipoprotein receptor 1 (OLR1) were considered key genes in AMI. CONCLUSION: Our research suggested that the underlying mechanism was related to inflammation and lipid formation. The hub genes identified were CD36, FPR2, ITGAM, and OLR1.

摘要

目的:采用加权基因共表达网络分析(WGCNA)确定急性心肌梗死患者心血管疾病最相关的基因。 方法:从基因表达综合数据库(GEO)网站下载GSE66360芯片数据集。分析纳入调整后P<0.05且|log2倍数变化(FC)|>0.5的差异基因。使用加权基因共表达网络分析(WGCNA)构建基因共表达网络并确定最显著的模块。利用Cytoscape筛选枢纽基因。对枢纽基因进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。将具有高统计学和生物学意义的基因定义为关键基因。 结果:从数据集中筛选出共4751个差异表达基因(DEG)。紫色模块在急性心肌梗死中具有最高的显著性。从该模块中鉴定出47个枢纽基因。GO术语“淀粉样β蛋白代谢”和“碳水化合物代谢”以及KEGG术语“吞噬体相关通路”和“金黄色葡萄球菌相关通路”是急性心肌梗死中强烈富集的通路。脂肪酸转运体分化簇(CD36)、甲酰肽受体2型(FPR2)、整合素αM亚基(ITGAM)和氧化型低密度脂蛋白受体1(OLR1)被认为是急性心肌梗死中的关键基因。 结论:我们的研究表明潜在机制与炎症和脂质形成有关。鉴定出的枢纽基因是CD36、FPR2、ITGAM和OLR1。

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[1]
Identification of crucial genes that induce coronary atherosclerosis through endothelial cell dysfunction in AMI-identifying hub genes by WGCNA.

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引用本文的文献

[1]
Differential Expression of Subsets of Genes Related to HDL Metabolism and Atherogenesis in the Peripheral Blood in Coronary Artery Disease.

Curr Issues Mol Biol. 2023-8-16

[2]
Prognostic Value of the Selected Polymorphisms in the Gene in the Domain-Encoding Lipid-Binding Region at a 10-Year Follow-Up for Early-Onset CAD Patients.

Biomedicines. 2023-4-30

本文引用的文献

[1]
Uncertainty in classification of death from fatal myocardial infarction: A nationwide analysis of regional variation in incidence and diagnostic support.

PLoS One. 2020-7-27

[2]
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Biomedicines. 2020-7-10

[3]
Serum Amyloid A1 (SAA1) Revisited: Restricted Leukocyte-Activating Properties of Homogeneous SAA1.

Front Immunol. 2020

[4]
Gender-specific associations of CD36 polymorphisms with the lipid profile and susceptibility to premature multi-vessel coronary artery heart disease in the Northern Han Chinese.

Gene. 2020-5-24

[5]
High density lipoprotein functionality and cardiovascular events and mortality: A systematic review and meta-analysis.

Atherosclerosis. 2020-6

[6]
Protection of renal damage by HMG-CoA inhibitors: A comparative study between atorvastatin and rosuvastatin.

Iran J Basic Med Sci. 2020-2

[7]
The Amyloid-Tau-Neuroinflammation Axis in the Context of Cerebral Amyloid Angiopathy.

Int J Mol Sci. 2019-12-14

[8]
identified by weighted gene co-expression network analysis as a hub candidate gene in lupus nephritis.

PeerJ. 2019-10-1

[9]
Atherosclerosis and flow: roles of epigenetic modulation in vascular endothelium.

J Biomed Sci. 2019-8-7

[10]
Identification of key genes involved in myocardial infarction.

Eur J Med Res. 2019-7-3

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