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单细胞 RNA 测序和批量 RNA 测序分析表明 EVI2B 或 CD361 对骨肉瘤 CD8+T 细胞的影响。

Analysis of scRNA-seq and bulk RNA-seq demonstrates the effects of EVI2B or CD361 on CD8 T cells in osteosarcoma.

机构信息

Department of Traumatic Orthopaedic, The First Affiliated Hospital of Guangxi Medical University, Nanning 530021, China.

Department of Orthopaedic, The Second Affiliated Hospital of Guangxi Medical University, Nanning 530005, China.

出版信息

Exp Biol Med (Maywood). 2023 Jan;248(2):130-145. doi: 10.1177/15353702221142607. Epub 2022 Dec 13.


DOI:10.1177/15353702221142607
PMID:36511103
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10041056/
Abstract

Osteosarcoma (OS) is a common primary malignant tumor of the bone in children and adolescents. The five-year survival rate is estimated to be ~70% based on the currently available treatment modalities. It is well known that tumor-infiltrating immune cells (TIICs) that are the most important components in the tumor microenvironment can exert a killing effect on tumor cells. Therefore, in the present study, 85 RNA-sequencing OS samples were categorized into high- and low-immune score groups with ESTIAMATE. Based on the immune score groups, 474 differentially expressed genes (DEGs) were acquired using the LIMMA package of R language. Subsequently, 86 DEGs were taken through univariate COX regression analysis, of which 14 were screened out by least absolute shrinkage and selection operator regression analysis. Furthermore, multivariate COX regression analysis was performed to obtain 4 DEGs. Finally, ecotropic virus integration site 2B (EVI2B) or CD361 gene was screened out via Kaplan-Meier analysis. In addition, CIBERSORT algorithm was used to evaluate the proportion of 22 kinds of TIICs in OS. Correlation analysis revealed that the high expression level of EVI2B can elevate the infiltrated proportion of CD8 T cells. Moreover, analysis of single cell RNA-sequencing transcriptome datasets and immunohistochemical staining uncovered that EVI2B was mainly expressed on CD8 T cells and that EVI2B could promote the expression of granzyme A and K of CD8 T cells to exhibit a potent killing effect on tumor cells. Therefore, EVI2B was identified as a protective immune-related gene and contributed to good prognosis in OS patients.

摘要

骨肉瘤(OS)是儿童和青少年中常见的骨原发性恶性肿瘤。根据目前可用的治疗方法,五年生存率估计约为 70%。众所周知,肿瘤浸润免疫细胞(TIICs)是肿瘤微环境中最重要的组成部分,可以对肿瘤细胞发挥杀伤作用。因此,在本研究中,通过 ESTIAMATE 将 85 个 RNA 测序 OS 样本分为高免疫评分组和低免疫评分组。基于免疫评分组,使用 R 语言的 LIMMA 包获得 474 个差异表达基因(DEGs)。随后,通过单变量 COX 回归分析对 86 个 DEGs 进行分析,其中通过最小绝对值收缩和选择算子回归分析筛选出 14 个基因。此外,通过多变量 COX 回归分析获得 4 个 DEGs。最后,通过 Kaplan-Meier 分析筛选出ecotropic virus integration site 2B(EVI2B)或 CD361 基因。此外,使用 CIBERSORT 算法评估 OS 中 22 种 TIIC 的比例。相关性分析表明,EVI2B 的高表达水平可以提高 CD8 T 细胞的浸润比例。此外,单细胞 RNA-seq 转录组数据集和免疫组织化学染色分析表明,EVI2B 主要表达在 CD8 T 细胞上,并且 EVI2B 可以促进 CD8 T 细胞中 granzyme A 和 K 的表达,对肿瘤细胞表现出强烈的杀伤作用。因此,EVI2B 被鉴定为保护性免疫相关基因,有助于 OS 患者的良好预后。

相似文献

[1]
Analysis of scRNA-seq and bulk RNA-seq demonstrates the effects of EVI2B or CD361 on CD8 T cells in osteosarcoma.

Exp Biol Med (Maywood). 2023-1

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引用本文的文献

[1]
A diagnostic signature developed based on the necroptosis-related genes and its association with immune infiltration in osteosarcoma.

Heliyon. 2024-8-10

[2]
Identifying squalene epoxidase as a metabolic vulnerability in high-risk osteosarcoma using an artificial intelligence-derived prognostic index.

Clin Transl Med. 2024-2

本文引用的文献

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Infliximab modifies regulatory T cells and co-inhibitory receptor expression on circulating T cells in psoriasis.

Int Immunopharmacol. 2021-7

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Reprod Biol. 2021-6

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CXCL11 Correlates With Antitumor Immunity and an Improved Prognosis in Colon Cancer.

Front Cell Dev Biol. 2021-3-11

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Cancer Med. 2021-5

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CDCA3 Is a Novel Prognostic Biomarker Associated with Immune Infiltration in Hepatocellular Carcinoma.

Biomed Res Int. 2021

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Single-cell RNA landscape of intratumoral heterogeneity and immunosuppressive microenvironment in advanced osteosarcoma.

Nat Commun. 2020-12-10

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Single-Cell RNA-Seq Analysis Reveals Microenvironmental Infiltration of Plasma Cells and Hepatocytic Prognostic Markers in HCC With Cirrhosis.

Front Oncol. 2020-11-2

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T-cell infiltration profile in musculoskeletal tumors.

J Orthop Res. 2021-3

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Effect of CXCR5-Positive Cell Infiltration on the Immune Contexture and Patient Prognosis in Head and Neck Squamous Cell Carcinoma.

Onco Targets Ther. 2020-6-22

[10]
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Front Oncol. 2020-4-30

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