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多中心研究的综合分析确定了皮肤黑色素瘤中 m7G 衍生修饰模式和风险分层系统。

Integrated analysis from multi-center studies identities m7G-derived modification pattern and risk stratification system in skin cutaneous melanoma.

机构信息

Department of Dermatology, Affiliated Hospital of Nantong University, Medical School of Nantong University, Nantong, China.

Department of Gastroenterology, Affiliated Hospital of Nantong University, Medical School of Nantong University, Nantong, China.

出版信息

Front Immunol. 2022 Dec 1;13:1034516. doi: 10.3389/fimmu.2022.1034516. eCollection 2022.

Abstract

The m7G modification has been proven to play an important role in RNA post-transcriptional modification and protein translation. However, the potential role of m7G modification patterns in assessing the prognosis of Skin cutaneous melanoma (SKCM) and tumor microenvironment (TME) has not been well studied. In this study, we investigated and finally identified 21 available m7G-related genes. We used hierarchical clustering (K-means) to classify 743 SKCM patients into three m7G-modified subtypes named m7G/gene cluster-A, B, C. We found that both m7G cluster B and gene cluster B exhibited higher prognosis and higher immune cell infiltration in TME compared to other subtypes. EIF4E3 and IFIT5, two m7G related genes, were both markedly elevated in Cluster B. Then, we constructed an m7G score system utilizing principal component analysis (PCA) in order to evaluate the patients' prognosis. High m7G score subtype was associated with better survival prognosis and active immune response. Overall, this article revealed that m7G modification patterns were involved in the development of the tumor microenvironment. Evaluating patients' m7G modification patterns will enhance our understanding of TME characteristics and help to guide personal treatment in clinics in the future.

摘要

m7G 修饰已被证明在 RNA 转录后修饰和蛋白质翻译中发挥重要作用。然而,m7G 修饰模式在评估皮肤黑色素瘤 (SKCM) 和肿瘤微环境 (TME) 预后中的潜在作用尚未得到充分研究。在这项研究中,我们进行了调查,最终确定了 21 个可用的 m7G 相关基因。我们使用层次聚类(K-means)将 743 名 SKCM 患者分为三个 m7G 修饰亚型,分别命名为 m7G/基因簇-A、B、C。我们发现,与其他亚型相比,m7G 簇 B 和基因簇 B 均表现出更高的预后和更高的肿瘤微环境中的免疫细胞浸润。EIF4E3 和 IFIT5 是两个 m7G 相关基因,在簇 B 中均明显升高。然后,我们利用主成分分析(PCA)构建了 m7G 评分系统,以评估患者的预后。高 m7G 评分亚型与更好的生存预后和活跃的免疫反应相关。总的来说,本文揭示了 m7G 修饰模式参与了肿瘤微环境的发展。评估患者的 m7G 修饰模式将增强我们对 TME 特征的理解,并有助于指导未来临床中的个体化治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01af/9751814/1d500c17b71c/fimmu-13-1034516-g001.jpg

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