Institute of Marine and Environmental Sciences, Center of Molecular Biology and Biotechnology, University of Szczecin, Waska 13, 71-415, Szczecin, Poland.
Department of Plant Protection, Faculty of Agriculture, University of Tehran, PO Box 4111, Karaj, 31587/11167, Iran.
Sci Rep. 2022 Dec 21;12(1):22063. doi: 10.1038/s41598-022-26188-w.
The aim of the study was sequencing of the mitogenome of Hygrobates turcicus Pešić, Esen & Dabert, 2017 to expand knowledge of the polymorphism and cryptic or pseudocryptic diversity within Hydrachnidia. The samples originated from Bulgaria, Vidima River near Debnewo, 42°56'41.4''N, 24°48'44.6''E, depth 0.4 m, stones on the bottom, water flow 0.71 m/s, temperature 10 °C, pH 8.53, oxygen 110%, conductivity 279 µS/cm, hardness 121 CaO mg/l; 11 males, 27 females, 2 deutonymphs 12.x.2019 leg. Zawal, Michoński & Bańkowska; one male and one female dissected and slides mounted. The study was carried out using the following methods: DNA extraction, sequencing, assembly and annotation, comparison with other populations of H. turcicus, and multigene phylogeny. As a result of the study, it was determined that the mitogenome is 15,006 bp long and encodes for 13 proteins, 2 rRNAs, and 22 tRNAs. The genome is colinear with those of H. longiporus and H. taniguchii, the difference in size originating from a non-coding region located between protein-coding genes ND4L and ND3. Five genes have alternative start-codon, and four display premature termination. The multigene phylogeny obtained using all mitochondrial protein-coding genes unambiguously associates H. turcicus with the cluster formed by H. longiporus and H. taniguchii.
本研究的目的是对 Hygrobates turcicus Pešić, Esen & Dabert, 2017 的线粒体基因组进行测序,以扩大对 Hydrachnidia 内多态性和隐或伪多样性的认识。样本来源于保加利亚,Vidima 河在 Debnewo 附近,42°56'41.4''N, 24°48'44.6''E,水深 0.4 m,水底有石头,水流速度 0.71 m/s,温度 10°C,pH 值 8.53,含氧量 110%,电导率 279 µS/cm,硬度 121 CaO mg/l;雄性 11 只,雌性 27 只,2 只若虫 2019 年 10 月 12 日 leg. Zawal, Michoński & Bańkowska;一只雄性和一只雌性被解剖并制成玻片。本研究采用了以下方法:DNA 提取、测序、组装和注释,与其他 H. turcicus 种群进行比较,以及多基因系统发育分析。研究结果表明,线粒体基因组长 15006 bp,编码 13 种蛋白质、2 种 rRNA 和 22 种 tRNA。基因组与 H. longiporus 和 H. taniguchii 的基因组具有共线性,大小差异源于位于 ND4L 和 ND3 蛋白编码基因之间的非编码区。有 5 个基因具有替代起始密码子,4 个基因显示过早终止。使用所有线粒体蛋白编码基因构建的多基因系统发育树明确将 H. turcicus 与由 H. longiporus 和 H. taniguchii 形成的聚类联系起来。