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驱动蛋白-3 马达 KIF1A 的 K 环中的正电荷通过增强一头部结合状态下的微管亲和力来调节超级运动性。

Positive charge in the K-loop of the kinesin-3 motor KIF1A regulates superprocessivity by enhancing microtubule affinity in the one-head-bound state.

机构信息

Departments of Chemistry and Biomedical Engineering, Pennsylvania State University, University Park, Pennsylvania, USA.

Departments of Chemistry and Biomedical Engineering, Pennsylvania State University, University Park, Pennsylvania, USA.

出版信息

J Biol Chem. 2023 Feb;299(2):102818. doi: 10.1016/j.jbc.2022.102818. Epub 2022 Dec 20.

Abstract

KIF1A is an essential neuronal transport motor protein in the kinesin-3 family, known for its superprocessive motility. However, structural features underlying this function are unclear. Here, we determined that superprocessivity of KIF1A dimers originates from a unique structural domain, the lysine-rich insertion in loop-12 termed the 'K-loop', which enhances electrostatic interactions between the motor and the microtubule. In 80 mM PIPES buffer, replacing the native KIF1A loop-12 with that of kinesin-1 resulted in a 6-fold decrease in run length, whereas adding additional positive charge to loop-12 enhanced the run length. Interestingly, swapping the KIF1A loop-12 into kinesin-1 did not enhance its run length, consistent with the two motor families using different mechanochemical tuning to achieve persistent transport. To investigate the mechanism by which the KIF1A K-loop enhances processivity, we used microtubule pelleting and single-molecule dwell time assays in ATP and ADP. First, the microtubule affinity was similar in ATP and in ADP, consistent with the motor spending the majority of its cycle in a weakly bound state. Second, the microtubule affinity and single-molecule dwell time in ADP were 6-fold lower in the loop-swap mutant than WT. Thus, the positive charge in loop-12 of KIF1A enhances the run length by stabilizing binding of the motor in its vulnerable one-head-bound state. Finally, through a series of mutants with varying positive charge in the K-loop, we found that KIF1A processivity is linearly dependent on the charge of loop-12, further highlighting how loop-12 contributes to the function of this key motor protein.

摘要

KIF1A 是驱动蛋白-3 家族中的一种必需神经元运输马达蛋白,以其超突运动性而闻名。然而,支持该功能的结构特征尚不清楚。在这里,我们确定 KIF1A 二聚体的超突运动性源自一个独特的结构域,即称为“K 环”的富含赖氨酸的环 12 插入物,该插入物增强了马达和微管之间的静电相互作用。在 80mM PIPES 缓冲液中,用驱动蛋白-1 的天然 KIF1A 环 12 替换 KIF1A 环 12 会导致运行长度减少 6 倍,而增加环 12 中的正电荷会增强运行长度。有趣的是,将 KIF1A 环 12 交换到驱动蛋白-1 中并没有增强其运行长度,这与两种马达家族使用不同的机械化学调谐来实现持续运输是一致的。为了研究 KIF1A K 环增强突运动性的机制,我们在 ATP 和 ADP 中使用微管沉淀和单分子停留时间测定法。首先,微管亲和力在 ATP 和 ADP 中相似,这与马达在其大部分循环中处于弱结合状态一致。其次,在环交换突变体中,ADP 中的微管亲和力和单分子停留时间比 WT 低 6 倍。因此,KIF1A 环 12 中的正电荷通过稳定马达在其脆弱的单头结合状态下的结合来增加运行长度。最后,通过一系列在 K 环中具有不同正电荷的突变体,我们发现 KIF1A 的突运动性与环 12 的电荷呈线性相关,进一步强调了环 12 如何有助于该关键马达蛋白的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a8/9871336/bc9fecdabe8d/gr1.jpg

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