• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

转录组和基因调控网络分析揭示了与[具体物种]成熟果实收获日期相关的新转录因子。 (注:原文中“in.”后面似乎缺失了具体物种信息)

Transcriptome and Gene Regulatory Network Analyses Reveal New Transcription Factors in Mature Fruit Associated with Harvest Date in .

作者信息

Núñez-Lillo Gerardo, Pérez-Reyes Wellasmin, Riveros Anibal, Lillo-Carmona Victoria, Rothkegel Karin, Álvarez José Miguel, Blanco-Herrera Francisca, Pedreschi Romina, Campos-Vargas Reinaldo, Meneses Claudio

机构信息

Escuela de Agronomía, Facultad de Ciencias Agronómicas y de los Alimentos, Pontificia Universidad Católica de Valparaíso, Quillota 2260000, Chile.

Centro de Biotecnología Vegetal, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago 8370186, Chile.

出版信息

Plants (Basel). 2022 Dec 12;11(24):3473. doi: 10.3390/plants11243473.

DOI:10.3390/plants11243473
PMID:36559585
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9783919/
Abstract

Harvest date is a critical parameter for producers and consumers regarding agro-industrial performance. It involves a pleiotropic effect controlling the development of other fruit quality traits through finely controlling regulatory mechanisms. Fruit ripening is a process in which various signals and biological events co-occur and are regulated by hormone signaling that produces the accumulation/degradation of multiple compounds. However, the regulatory mechanisms that control the hormone signaling involved in fruit development and ripening are still unclear. To investigate the issue, we used individuals with early, middle and late harvest dates from a peach segregating population to identify regulatory candidate genes controlling fruit quality traits at the harvest stage and validate them in contrasting peach varieties for this trait. We identified 467 and 654 differentially expressed genes for early and late harvest through a transcriptomic approach. In addition, using the Arabidopsis DAP-seq database and network analysis, six transcription factors were selected. Our results suggest significant hormonal balance and cell wall composition/structure differences between early and late harvest samples. Thus, we propose that higher expression levels of the transcription factors , and in early harvest individuals would induce the expression of genes associated with the jasmonic acid pathway, photosynthesis and gibberellins inhibition. While on the other hand, the high expression levels of , and in late harvest individuals would promote the induction of genes associated with abscisic acid biosynthesis, auxins and cell wall remodeling.

摘要

收获日期对于生产者和消费者而言,是关乎农产品加工业表现的关键参数。它涉及一种多效性效应,通过精细调控调控机制来控制其他果实品质性状的发育。果实成熟是一个各种信号和生物学事件同时发生且受激素信号调控的过程,激素信号会导致多种化合物的积累/降解。然而,控制果实发育和成熟过程中激素信号的调控机制仍不清楚。为了研究这个问题,我们利用一个桃分离群体中收获日期早、中、晚的个体,来鉴定在收获阶段控制果实品质性状的调控候选基因,并在该性状表现不同的桃品种中对其进行验证。我们通过转录组学方法鉴定出了467个和654个分别在早收和晚收时差异表达的基因。此外,利用拟南芥DAP-seq数据库和网络分析,挑选出了6个转录因子。我们的结果表明,早收和晚收样本之间存在显著的激素平衡以及细胞壁组成/结构差异。因此,我们提出,早收个体中转录因子 、 和 的较高表达水平会诱导与茉莉酸途径、光合作用和赤霉素抑制相关的基因表达。而另一方面,晚收个体中 、 和 的高表达水平会促进与脱落酸生物合成、生长素和细胞壁重塑相关基因的诱导表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/f2b122478eaa/plants-11-03473-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/ca90c908e3bf/plants-11-03473-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/f66f3d3ee9c8/plants-11-03473-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/38312b9526ad/plants-11-03473-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/f2b122478eaa/plants-11-03473-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/ca90c908e3bf/plants-11-03473-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/f66f3d3ee9c8/plants-11-03473-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/38312b9526ad/plants-11-03473-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c7d/9783919/f2b122478eaa/plants-11-03473-g004.jpg

相似文献

1
Transcriptome and Gene Regulatory Network Analyses Reveal New Transcription Factors in Mature Fruit Associated with Harvest Date in .转录组和基因调控网络分析揭示了与[具体物种]成熟果实收获日期相关的新转录因子。 (注:原文中“in.”后面似乎缺失了具体物种信息)
Plants (Basel). 2022 Dec 12;11(24):3473. doi: 10.3390/plants11243473.
2
Unravelling the Molecular Regulation Mechanisms of Slow Ripening Trait in .解析……中慢熟性状的分子调控机制
Plants (Basel). 2021 Nov 5;10(11):2380. doi: 10.3390/plants10112380.
3
Identification and Analysis of Long Non-Coding RNAs Related to UV-B-Induced Anthocyanin Biosynthesis During Blood-Fleshed Peach () Ripening.红肉桃()成熟过程中与UV-B诱导的花青素生物合成相关的长链非编码RNA的鉴定与分析。
Front Genet. 2022 Aug 9;13:932207. doi: 10.3389/fgene.2022.932207. eCollection 2022.
4
Comparative EST transcript profiling of peach fruits under different post-harvest conditions reveals candidate genes associated with peach fruit quality.不同采后条件下桃果实的EST转录本比较分析揭示了与桃果实品质相关的候选基因。
BMC Genomics. 2009 Sep 10;10:423. doi: 10.1186/1471-2164-10-423.
5
Carbon metabolism of peach fruit after harvest: changes in enzymes involved in organic acid and sugar level modifications.桃果实采后碳代谢:参与有机酸和糖水平调节的酶的变化
J Exp Bot. 2009;60(6):1823-37. doi: 10.1093/jxb/erp055. Epub 2009 Mar 5.
6
Jasmonate-induced transcriptional changes suggest a negative interference with the ripening syndrome in peach fruit.茉莉酸诱导的转录变化表明对桃果实成熟综合征存在负干扰。
J Exp Bot. 2008;59(3):563-73. doi: 10.1093/jxb/erm331. Epub 2008 Feb 4.
7
Genome-wide identification and transcriptome profiling reveal that E3 ubiquitin ligase genes relevant to ethylene, auxin and abscisic acid are differentially expressed in the fruits of melting flesh and stony hard peach varieties.全基因组鉴定和转录组谱分析表明,与乙烯、生长素和脱落酸相关的 E3 泛素连接酶基因在肉质桃和硬肉桃品种的果实中差异表达。
BMC Genomics. 2019 Nov 21;20(1):892. doi: 10.1186/s12864-019-6258-0.
8
Double NCED isozymes control ABA biosynthesis for ripening and senescent regulation in peach fruits.双 NCED 同工酶控制 ABA 的生物合成,以调节桃果实的成熟和衰老。
Plant Sci. 2021 Mar;304:110739. doi: 10.1016/j.plantsci.2020.110739. Epub 2020 Nov 4.
9
Metabolic profiling of a range of peach fruit varieties reveals high metabolic diversity and commonalities and differences during ripening.对一系列桃果实品种的代谢谱分析揭示了其在成熟过程中的高度代谢多样性以及共性与差异。
Food Chem. 2016 Jan 1;190:879-888. doi: 10.1016/j.foodchem.2015.06.043. Epub 2015 Jun 16.
10
Comparative Transcriptomic Profiling to Understand Pre- and Post-Ripening Hormonal Regulations and Anthocyanin Biosynthesis in Early Ripening Apple Fruit.比较转录组学分析揭示早采苹果果实成熟过程中激素调控和花色苷生物合成的机制
Molecules. 2018 Jul 31;23(8):1908. doi: 10.3390/molecules23081908.

引用本文的文献

1
A reproducible ddRAD-seq protocol reveals novel genomic association signatures for fruit-related traits in peach.一种可重复的ddRAD-seq方案揭示了桃果实相关性状的新基因组关联特征。
Plant Methods. 2025 Jul 22;21(1):101. doi: 10.1186/s13007-025-01415-3.

本文引用的文献

1
Unravelling the Molecular Regulation Mechanisms of Slow Ripening Trait in .解析……中慢熟性状的分子调控机制
Plants (Basel). 2021 Nov 5;10(11):2380. doi: 10.3390/plants10112380.
2
ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks.ConnecTF:一个整合转录因子-基因相互作用并验证调控网络的平台。
Plant Physiol. 2021 Feb 25;185(1):49-66. doi: 10.1093/plphys/kiaa012.
3
The Transcription Factor CDF3 Is Involved in Nitrogen Responses and Improves Nitrogen Use Efficiency in Tomato.
转录因子CDF3参与番茄的氮响应并提高其氮利用效率。
Front Plant Sci. 2020 Nov 24;11:601558. doi: 10.3389/fpls.2020.601558. eCollection 2020.
4
Comparative transcriptome and metabolome analyses of two strawberry cultivars with different storability.两种不同耐贮性草莓品种的转录组和代谢组比较分析。
PLoS One. 2020 Dec 2;15(12):e0242556. doi: 10.1371/journal.pone.0242556. eCollection 2020.
5
Jasmonic acid: a key frontier in conferring abiotic stress tolerance in plants.茉莉酸:赋予植物非生物胁迫耐受性的关键前沿。
Plant Cell Rep. 2021 Aug;40(8):1513-1541. doi: 10.1007/s00299-020-02614-z. Epub 2020 Oct 9.
6
ABSCISIC ACID-DEFICIENT4 Has an Essential Function in Both cis-Violaxanthin and cis-Neoxanthin Synthesis.ABA 缺陷型 4 在顺式玉米黄质和顺式新黄质合成中均具有必需功能。
Plant Physiol. 2020 Nov;184(3):1303-1316. doi: 10.1104/pp.20.00947. Epub 2020 Sep 3.
7
Genome-wide identification of the ARF (auxin response factor) gene family in peach and their expression analysis.桃基因组中 ARF(生长素反应因子)基因家族的全基因组鉴定及其表达分析。
Mol Biol Rep. 2020 Jun;47(6):4331-4344. doi: 10.1007/s11033-020-05525-0. Epub 2020 May 19.
8
CIRCADIAN CLOCK ASSOCIATED 1 gates morning phased auxin response in Arabidopsis thaliana.生物钟关联蛋白1调控拟南芥中早晨阶段的生长素反应。
Biochem Biophys Res Commun. 2020 Jul 5;527(4):935-940. doi: 10.1016/j.bbrc.2020.05.049. Epub 2020 May 16.
9
Functions of Jasmonic Acid in Plant Regulation and Response to Abiotic Stress.茉莉酸在植物调节和非生物胁迫响应中的功能。
Int J Mol Sci. 2020 Feb 20;21(4):1446. doi: 10.3390/ijms21041446.
10
Jasmonic Acid Signaling Pathway in Plants.植物中的茉莉酸信号通路。
Int J Mol Sci. 2019 May 20;20(10):2479. doi: 10.3390/ijms20102479.