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使用BD MAX™开放式系统通过多重实时荧光定量PCR熔解曲线分析快速检测产碳青霉烯酶基因

Rapid Detection of Carbapenemase-producing Genes by Multiplex Real-Time PCR with Melting Curve Analysis using a BD MAX™ Open System.

作者信息

Nakamura Akihiro, Ohta Kaichi, Komatsu Masaru

机构信息

Department of Clinical Laboratory Science, Faculty of Health Care, Tenri Health Care University.

Nippon Becton Dickinson Co., Ltd.

出版信息

Rinsho Biseibutshu Jinsoku Shindan Kenkyukai Shi. 2022 Dec 26;32(1):13-21.

Abstract

Recently, the global spread of carbapenemase-producing Enterobacterales has become a concern, and rapid detection methods are required. We have developed a rapid and inexpensive multiplex real-time PCR with melting curve analysis using the BD MAX™ system and evaluated it. We used 31 carbapenemase-producing Gram-negative bacteria ( group, 12; group, 6; group, 5; group, 3; group, 3; -like group, 1 strain; and group + , 1 strain), 10 AmpC-producing Gram-negative bacteria, and 10 ESBLproducing Gram-negative bacteria. A BD MAX™ open platform system was used. Carbapenemase-positive and carbapenemase-negative strains were correctly identified 30 of 31 (excluding a group and group co-coding strain) and all 20 of 20 isolates, respectively. Melting temperature (Tm) values of the various genes were as follows: group, 81.2±0.5°C; group, 91.8±0.4°C; group, 85.4±0.3°C; group, 90.5±0.3°C; group, 94.1±0.5°C; and -like group, 82.1°C. Identification of the various genotypes was possible from the Tm values. However, only a peak derived from the group could be detected in the strains producing both group and group simultaneously, suggesting that only the genotype with the highest expression level could be captured in cases of simultaneous production. In the carbapenemase-negative strains, no obvious peaks were observed in the 20 AmpC and 20 ESBL-producing Gram-negative bacteria, and even when Tm values were detected, the dF/dT values were low and easily differentiated. This method appears to be very useful as a rapid and inexpensive test that can provide detection in about 2 hours.

摘要

近年来,产碳青霉烯酶肠杆菌科细菌在全球范围内的传播已引起关注,因此需要快速检测方法。我们开发了一种使用BD MAX™系统进行熔解曲线分析的快速且廉价的多重实时PCR方法,并对其进行了评估。我们使用了31株产碳青霉烯酶的革兰氏阴性菌(A组,12株;B组,6株;C组,5株;D组,3株;E组,3株;OXA-48样组,1株;以及NDM-1组+KPC组,1株)、10株产AmpC酶的革兰氏阴性菌和10株产ESBLs的革兰氏阴性菌。使用了BD MAX™开放平台系统。碳青霉烯酶阳性和碳青霉烯酶阴性菌株分别在31株中的30株(不包括A组和B组共编码菌株)以及所有20株分离株中被正确鉴定。各种基因的熔解温度(Tm)值如下:A组,81.2±0.5°C;B组,91.8±0.4°C;C组,85.4±0.3°C;D组,90.5±0.3°C;E组,94.1±0.5°C;以及OXA-48样组,82.1°C。根据Tm值可以鉴定各种基因型。然而,在同时产生A组和B组酶的菌株中,仅检测到来自A组的峰,这表明在同时产生的情况下,只能捕获表达水平最高的基因型。在碳青霉烯酶阴性菌株中,在20株产AmpC酶和20株产ESBLs的革兰氏阴性菌中未观察到明显的峰,即使检测到Tm值,dF/dT值也很低且易于区分。该方法作为一种快速且廉价的检测方法似乎非常有用,大约2小时即可提供检测结果。

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