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H、N、C 骨架和侧链共振分配及小鼠 NOTCH1 EGF27 的二级结构。

H, N, C backbone and sidechain resonance assignments and secondary structure of mouse NOTCH1 EGF27.

机构信息

Department of Chemistry, Louisiana State University, Baton Range, LA, 70803, USA.

Department of Biochemistry and Molecular Biology, Complex Carbohydrate Research Center, The University of Georgia, Athens, GA, 30602, USA.

出版信息

Biomol NMR Assign. 2023 Jun;17(1):27-35. doi: 10.1007/s12104-022-10116-0. Epub 2022 Dec 24.

Abstract

NOTCH1 is a transmembrane receptor in metazoans that is linked to a variety of disorders. The receptor contains an extracellular domain (ECD) with 36 tandem epidermal growth factor-like (EGF) repeats. The ECD is responsible for intercellular signaling via protein-ligand interactions with neighboring cells. Each EGF repeat consists of approximately 40 amino acids and 3 conserved disulfide bonds. The Abruptex region (EGF24-29) is critical for NOTCH1 signaling and is known for its missense mutations. Certain EGF repeats are modified with the addition of O-linked glycans and many have calcium binding sites, which give each EGF repeat a unique function. It has been shown that the loss of the O-fucose site of EGF27 alters NOTCH1 activity. To investigate the role of glycosylation in the NOTCH1 signaling pathway, nuclear magnetic resonance spectroscopy has been employed to study the structures of EGF27 and its glycoforms. Here, we report the backbone and sidechain H, N, and C-resonance assignments of the unmodified EGF27 protein and the predicted secondary structure derived from the assigned chemical shifts.

摘要

NOTCH1 是一种存在于后生动物中的跨膜受体,与多种疾病有关。该受体包含一个具有 36 个串联表皮生长因子样(EGF)重复的细胞外结构域(ECD)。ECD 通过与相邻细胞的蛋白-配体相互作用负责细胞间信号传递。每个 EGF 重复由大约 40 个氨基酸和 3 个保守的二硫键组成。Abruptex 区域(EGF24-29)对 NOTCH1 信号传递至关重要,并且以其错义突变而闻名。某些 EGF 重复通过添加 O-连接聚糖进行修饰,并且许多具有钙结合位点,这使每个 EGF 重复具有独特的功能。已经表明,EGF27 的 O-岩藻糖位点的缺失会改变 NOTCH1 的活性。为了研究糖基化在 NOTCH1 信号通路中的作用,已采用核磁共振波谱法来研究 EGF27 及其糖型的结构。在这里,我们报告了未经修饰的 EGF27 蛋白的骨架和侧链 H、N 和 C 共振分配以及根据分配的化学位移预测的二级结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/711c/10626972/340d7ec6b990/nihms-1939236-f0001.jpg

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