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连续生物标志物的协变量特异性评估。

Covariate-specific evaluation of continuous biomarker.

机构信息

Department of Biostatistics, The University of Texas at MD Anderson Cancer Center, Houston, Texas, USA.

Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia, USA.

出版信息

Stat Med. 2023 Mar 30;42(7):953-969. doi: 10.1002/sim.9652. Epub 2023 Jan 4.

DOI:10.1002/sim.9652
PMID:36600184
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10071998/
Abstract

Diagnostic tests usually need to operate at a high sensitivity or specificity level in practice. Accordingly, specificity at the controlled sensitivity, or vice versa, is a clinically sensible performance metric for evaluating continuous biomarkers. Meanwhile, the performance of a biomarker may vary across sub-populations as defined by covariates, and covariate-specific evaluation can be informative. In this article, we develop a novel modeling and estimation method for covariate-specific specificity at a controlled sensitivity level. Unlike existing methods which typically adopt elaborate models of covariate effects over the entire biomarker distribution, our approach models covariate effects locally at a specific sensitivity level of interest. We also extend our proposed model to handle the whole continuum of sensitivities via dynamic regression and derive covariate-specific ROC curves. We provide the variance estimation through bootstrapping. The asymptotic properties are established. We conduct extensive simulation studies to evaluate the performance of our proposed methods in comparison with existing methods, and further illustrate the applications in two clinical studies for aggressive prostate cancer.

摘要

诊断测试通常需要在实践中具有高灵敏度或特异性水平。因此,在控制灵敏度下的特异性,或者反之,是评估连续生物标志物的临床合理性能指标。同时,生物标志物的性能可能因协变量定义的亚人群而有所不同,并且协变量特异性评估可能具有信息性。在本文中,我们开发了一种新的建模和估计方法,用于在控制灵敏度水平下的协变量特异性。与通常采用整个生物标志物分布上的协变量效应精细模型的现有方法不同,我们的方法在感兴趣的特定灵敏度水平上局部建模协变量效应。我们还通过动态回归将我们提出的模型扩展到处理整个灵敏度范围,并得出协变量特异性 ROC 曲线。我们通过自举法提供方差估计。建立了渐近性质。我们进行了广泛的模拟研究,以比较我们提出的方法与现有方法的性能,并进一步在两个用于侵袭性前列腺癌的临床研究中说明了其应用。

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1
Covariate-specific evaluation of continuous biomarker.连续生物标志物的协变量特异性评估。
Stat Med. 2023 Mar 30;42(7):953-969. doi: 10.1002/sim.9652. Epub 2023 Jan 4.
2
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本文引用的文献

1
Covariate adjustment in continuous biomarker assessment.连续生物标志物评估中的协变量调整。
Biometrics. 2023 Mar;79(1):39-48. doi: 10.1111/biom.13601. Epub 2021 Dec 14.
2
Prostate Cancer Biomarker Development: National Cancer Institute's Early Detection Research Network Prostate Cancer Collaborative Group Review.前列腺癌生物标志物的开发:美国国家癌症研究所早期检测研究网络前列腺癌协作组综述。
Cancer Epidemiol Biomarkers Prev. 2020 Dec;29(12):2454-2462. doi: 10.1158/1055-9965.EPI-20-1104. Epub 2020 Oct 22.
3
Restoration of Monotonicity Respecting in Dynamic Regression.
动态回归中单调性质的恢复
J Am Stat Assoc. 2017;112(518):613-622. doi: 10.1080/01621459.2016.1149070. Epub 2017 Mar 30.
4
Association Between Combined TMPRSS2:ERG and PCA3 RNA Urinary Testing and Detection of Aggressive Prostate Cancer.联合 TMPRSS2:ERG 和 PCA3 RNA 尿检测与侵袭性前列腺癌的检出相关。
JAMA Oncol. 2017 Aug 1;3(8):1085-1093. doi: 10.1001/jamaoncol.2017.0177.
5
The prostate health index selectively identifies clinically significant prostate cancer.前列腺健康指数可选择性地识别具有临床意义的前列腺癌。
J Urol. 2015 Apr;193(4):1163-9. doi: 10.1016/j.juro.2014.10.121. Epub 2014 Nov 15.
6
The Prostate Health Index: a new test for the detection of prostate cancer.前列腺健康指数:一种用于检测前列腺癌的新测试。
Ther Adv Urol. 2014 Apr;6(2):74-7. doi: 10.1177/1756287213513488.
7
Radical prostatectomy or watchful waiting in early prostate cancer.早期前列腺癌行前列腺根治性切除术或密切观察。
N Engl J Med. 2014 Mar 6;370(10):932-42. doi: 10.1056/NEJMoa1311593.
8
ROC analysis in biomarker combination with covariate adjustment.联合协变量调整的生物标志物 ROC 分析。
Acad Radiol. 2013 Jul;20(7):874-82. doi: 10.1016/j.acra.2013.03.009.
9
Multicenter evaluation of [-2]proprostate-specific antigen and the prostate health index for detecting prostate cancer.多中心评估 [-2] 前列腺特异性抗原和前列腺健康指数在前列腺癌检测中的应用。
Clin Chem. 2013 Jan;59(1):306-14. doi: 10.1373/clinchem.2012.195784. Epub 2012 Dec 4.
10
Adjusting for covariate effects on classification accuracy using the covariate-adjusted receiver operating characteristic curve.使用协变量调整后的受试者工作特征曲线来调整协变量对分类准确性的影响。
Biometrika. 2009 Jun;96(2):371-382. doi: 10.1093/biomet/asp002. Epub 2009 Apr 1.