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基于机器学习和组学的坏死性小肠结肠炎生物标志物。

Biomarkers of necrotizing enterocolitis in the era of machine learning and omics.

机构信息

Department of Surgery, The University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.

Department of Microbiology and Immunology, Stead Family Department of Pediatrics, University of Iowa, Iowa City, IA, USA.

出版信息

Semin Perinatol. 2023 Feb;47(1):151693. doi: 10.1016/j.semperi.2022.151693. Epub 2022 Dec 21.

DOI:10.1016/j.semperi.2022.151693
PMID:36604292
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9975050/
Abstract

Necrotizing enterocolitis (NEC) continues to be a major cause of morbidity and mortality in preterm infants. Despite decades of research in NEC, no reliable biomarkers can accurately diagnose NEC or predict patient prognosis. The recent emergence of multi-omics could potentially shift NEC biomarker discovery, particularly when evaluated using systems biology techniques. Furthermore, the use of machine learning and artificial intelligence in analyzing this 'big data' could enable novel interpretations of NEC subtypes, disease progression, and potential therapeutic targets, allowing for integration with personalized medicine approaches. In this review, we evaluate studies using omics technologies and machine learning in the diagnosis of NEC. Future implications and challenges inherent to the field are also discussed.

摘要

新生儿坏死性小肠结肠炎(NEC)仍然是早产儿发病和死亡的主要原因。尽管在 NEC 方面已经开展了数十年的研究,但仍没有可靠的生物标志物可以准确诊断 NEC 或预测患者预后。最近出现的多组学技术可能会改变 NEC 生物标志物的发现,特别是在使用系统生物学技术进行评估时。此外,在分析这种“大数据”时使用机器学习和人工智能,可以对 NEC 亚型、疾病进展和潜在治疗靶点进行新的解释,从而与个性化医疗方法相结合。在这篇综述中,我们评估了使用组学技术和机器学习来诊断 NEC 的研究。还讨论了该领域固有的未来意义和挑战。

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本文引用的文献

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Predicting clinical outcomes using artificial intelligence and machine learning in neonatal intensive care units: a systematic review.在新生儿重症监护病房中使用人工智能和机器学习预测临床结果:一项系统综述。
J Perinatol. 2022 Dec;42(12):1561-1575. doi: 10.1038/s41372-022-01392-8. Epub 2022 May 13.
2
Interpretable prediction of necrotizing enterocolitis from machine learning analysis of premature infant stool microbiota.基于机器学习分析早产儿粪便微生物组预测坏死性小肠结肠炎
BMC Bioinformatics. 2022 Mar 25;23(1):104. doi: 10.1186/s12859-022-04618-w.
3
miRNA-21 plays an important role in necrotizing enterocolitis.微小RNA-21在坏死性小肠结肠炎中起重要作用。
Arch Med Sci. 2019 Sep 17;18(2):406-412. doi: 10.5114/aoms.2019.88013. eCollection 2022.
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Differential Expression Profiles and Functional Prediction of circRNAs in Necrotizing Enterocolitis.CircRNAs 在坏死性小肠结肠炎中的差异表达谱及功能预测。
Biomed Res Int. 2021 Nov 3;2021:9862066. doi: 10.1155/2021/9862066. eCollection 2021.
5
Unraveling the Microbiome of Necrotizing Enterocolitis: Insights in Novel Microbial and Metabolomic Biomarkers.解析坏死性小肠结肠炎的微生物组学:新型微生物和代谢组学生物标志物的研究进展。
Microbiol Spectr. 2021 Oct 31;9(2):e0117621. doi: 10.1128/Spectrum.01176-21. Epub 2021 Oct 27.
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