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CircRNAs 在坏死性小肠结肠炎中的差异表达谱及功能预测。

Differential Expression Profiles and Functional Prediction of circRNAs in Necrotizing Enterocolitis.

机构信息

Department of Pediatrics, Women's Hospital of Nanjing Medical University, Nanjing Maternity and Child Health Care Hospital, Nanjing, Jiangsu, China.

出版信息

Biomed Res Int. 2021 Nov 3;2021:9862066. doi: 10.1155/2021/9862066. eCollection 2021.

Abstract

Circular RNAs (circRNAs), a novel type of noncoding RNAs, have been demonstrated to behave as microRNA (miRNA) sponges to exert their effects during pathological processes of diseases. However, the roles of circRNAs have not been explored in necrotizing enterocolitis (NEC). This study sought to identify differentially expressed circRNAs and predict their potential biological functions in NEC. circRNA expression profiles in terminal ileum from newborn rats with NEC and normal controls were explored using next-generation sequencing. In the NEC group, 53 circRNAs were significantly differentially expressed, including 9 upregulated and 44 downregulated. Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses were conducted, and circRNA-miRNA interaction networks were generated to predict the potential roles of circRNAs in NEC progression. Further investigation revealed that most circRNAs include miRNA binding sites and that some are implicated in NEC development. In conclusion, this study's findings demonstrate that differentially expressed circRNAs are involved in NEC development via their interactions with miRNAs, making them prospective targets for NEC diagnosis and treatment.

摘要

环状 RNA(circRNAs)作为一种新型非编码 RNA,已被证明可作为 microRNA(miRNA)海绵在疾病的病理过程中发挥作用。然而,circRNAs 在坏死性小肠结肠炎(NEC)中的作用尚未得到探索。本研究旨在鉴定差异表达的 circRNAs 并预测其在 NEC 中的潜在生物学功能。采用下一代测序技术探讨 NEC 新生儿和正常对照组末端回肠中 circRNA 的表达谱。在 NEC 组中,有 53 个 circRNA 表达显著差异,其中 9 个上调,44 个下调。进行了基因本体论和京都基因与基因组百科全书通路分析,并生成了 circRNA-miRNA 相互作用网络,以预测 circRNAs 在 NEC 进展中的潜在作用。进一步研究表明,大多数 circRNAs 包含 miRNA 结合位点,其中一些与 NEC 发育有关。总之,本研究结果表明,差异表达的 circRNAs 通过与 miRNA 的相互作用参与 NEC 的发生发展,使它们成为 NEC 诊断和治疗的有前景的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5662/8581514/fe40e51e5b57/BMRI2021-9862066.001.jpg

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