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从突尼斯废水中分离的大肠杆菌噬菌体 fBC-Eco01 的特性和基因组分析。

Characterization and genome analysis of Escherichia phage fBC-Eco01, isolated from wastewater in Tunisia.

机构信息

Centre de Recherches et des Technologies des Eaux (CERTE) Laboratoire Eaux, Membranes et Biotechnologies de L'Environnement (LR19CERTE04), Technopark Borj Cedria, Tunisia.

Faculté des Sciences de Bizerte, Université de Carthage, 7021, Jarzouna, Tunisia.

出版信息

Arch Virol. 2023 Jan 7;168(2):44. doi: 10.1007/s00705-022-05680-8.

Abstract

The rise of antibiotic resistance in bacterial strains has led to vigorous exploration for alternative treatments. To this end, phage therapy has been revisited, and it is gaining increasing attention, as it may represent an efficient alternative for treating multiresistant pathogenic bacteria. Phage therapy is considered safe, and phages do not infect eukaryotic cells. There have been many studies investigating phage-host bacteria interactions and the ability of phages to target specific hosts. Escherichia coli is the causative agent of a multitude of infections, ranging from urinary tract infections to sepsis, with growing antibiotic resistance. In this study, we characterized the Escherichia phage fBC-Eco01, which was isolated from a water sample collected at Oued, Tunis. Electron microscopy showed that fBC-Eco01 phage particles have siphovirus morphology, with an icosahedral head of 61 ± 3 nm in diameter and a non-contractile tail of 94 ± 2 nm in length and 12 ± 0.9 nm in width. The genome of fBC-Eco01 is a linear double-stranded DNA of 43.466 bp with a GC content of 50.4%. Comparison to databases allowed annotation of the functions to 39 of the 78 predicted gene products. A single-step growth curve revealed that fBC-Eco01 has a latent period of 30 minutes and a burst size of 175 plaque-forming units (PFU) per infected cell. Genomic analysis indicated that fBC-Eco01 is a member of the subfamily Guernseyvirinae. It is most closely related to a group of phages of the genus Kagunavirus that infect Enterobacter, Raoultella, and Escherichia strains.

摘要

细菌对抗生素耐药性的上升导致人们积极探索替代疗法。为此,噬菌体治疗已重新受到关注,因为它可能是治疗多耐药性病原菌的有效替代方法。噬菌体治疗被认为是安全的,并且噬菌体不会感染真核细胞。已经有许多研究调查了噬菌体-宿主细菌相互作用以及噬菌体靶向特定宿主的能力。大肠杆菌是多种感染的病原体,从尿路感染到败血症,抗生素耐药性日益增加。在这项研究中,我们对从突尼斯 Oued 采集的水样中分离出的大肠杆菌噬菌体 fBC-Eco01 进行了表征。电子显微镜显示,fBC-Eco01 噬菌体颗粒具有丝状噬菌体形态,直径为 61 ± 3nm 的二十面体头部和 94 ± 2nm 的非收缩尾部,宽度为 12 ± 0.9nm。fBC-Eco01 的基因组是一条长 43.466bp 的线性双链 DNA,GC 含量为 50.4%。与数据库的比较允许注释 78 个预测基因产物中的 39 个功能。一步生长曲线表明,fBC-Eco01 的潜伏期为 30 分钟,每个感染细胞的爆发量为 175 个噬菌斑形成单位 (PFU)。基因组分析表明,fBC-Eco01 是 Guernseyvirinae 亚科的成员。它与一组感染肠杆菌、罗阿氏菌和大肠杆菌菌株的 Kagunavirus 属噬菌体最为密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47fc/9825357/60cde37098b5/705_2022_5680_Fig1_HTML.jpg

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