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新型噬菌体 VB_EcoS-Golestan 分离鉴定及其全基因组分析,该噬菌体对尿路感染多药耐药大肠杆菌具有感染性。

Isolation, Characterization and Genomic Analysis of a Novel Bacteriophage VB_EcoS-Golestan Infecting Multidrug-Resistant Escherichia coli Isolated from Urinary Tract Infection.

机构信息

Department of Biology, Faculty of Sciences, University of Isfahan, 81746-73441, Isfahan, Iran.

Laboratory Sciences Research Center, Golestan University of Medical Sciences, 4934174515, Gorgan, Iran.

出版信息

Sci Rep. 2020 May 6;10(1):7690. doi: 10.1038/s41598-020-63048-x.

Abstract

Escherichia coli (E. coli) is one of the most common uropathogenic bacteria. The emergence of multi-drug resistance among these bacteria resulted in a worldwide public health problem which requires alternative treatment approaches such as phage therapy. In this study, phage VB_EcoS-Golestan, a member of Siphoviridae family, with high lytic ability against E. coli isolates, was isolated from wastewater. Its burst size was large and about 100 plaque-forming units/infected cell, rapid adsorption time, and high resistance to a broad range of pH and temperatures. Bioinformatics analysis of the genomic sequence suggests that VB_EcoS-Golestan is a new phage closely related to Escherichia phages in the Kagunavirus genus, Guernseyvirinae subfamily of Siphoviridae. The genome size was 44829 bp bp that encodes 78 putative ORFs, no tRNAs, 7 potential promoter sequences and 13 Rho-factor-independent terminators. No lysogenic mediated genes were detected in VB_EcoS-Golestan genome. Overall VB_EcoS-Golestan might be used as a potential treatment approach for controlling E. coli mediated urinary tract infection, however, further studies are essential to ensure its safety.

摘要

大肠杆菌(E. coli)是最常见的尿路致病性细菌之一。这些细菌中出现的多药耐药性导致了全球公共卫生问题,需要替代治疗方法,如噬菌体治疗。在这项研究中,从废水中分离出了一种属于长尾噬菌体科的噬菌 VB_EcoS-Golestan,它对大肠杆菌分离株具有很强的裂解能力。它的爆发量很大,约为 100 个噬菌斑形成单位/感染细胞,吸附时间快,对广泛的 pH 值和温度具有高抗性。基因组序列的生物信息学分析表明,VB_EcoS-Golestan 是一种与 Kagunavirus 属的大肠杆菌噬菌体密切相关的新噬菌体,属于长尾噬菌体科的 Guernseyvirinae 亚科。基因组大小为 44829bp,编码 78 个推定的 ORF,没有 tRNA、7 个潜在的启动子序列和 13 个 Rho 因子非依赖性终止子。在 VB_EcoS-Golestan 基因组中未检测到溶原介导的基因。总体而言,VB_EcoS-Golestan 可能被用作控制大肠杆菌引起的尿路感染的潜在治疗方法,但需要进一步研究以确保其安全性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8e3/7203180/3c1fa02f3ae5/41598_2020_63048_Fig1_HTML.jpg

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