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s,木薯生长发育与非生物胁迫相互作用中的功能通才。 (你提供的原文似乎不太完整,可能影响准确理解和翻译质量,建议检查或补充完整内容。)

s, functional generalists in interactions between cassava growth and development, and abiotic stresses.

作者信息

Wu Yan-Liu, Chen Yu-Lan, Wei Li, Fan Xian-Wei, Dong Ming-You, Li You-Zhi

机构信息

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/College of Life Science and Technology, Guangxi University, 100 Daxue Road, Nanning, Guangxi 530004, P.R. China.

出版信息

AoB Plants. 2022 Nov 25;15(1):plac057. doi: 10.1093/aobpla/plac057. eCollection 2023 Jan.

Abstract

The proteins with DNA-binding preference to the consensus DNA sequence (A/T) GATA (A/G) belong to a GATA transcription factor family, with a wide array of biological processes in plants. Cassava () is an important food crop with high production of starch in storage roots. Little was however known about cassava GATA domain-containing genes (s). Thirty-six s, to , were found in this study. Some s showed a collinear relationship with orthologous genes of , poplar and potato, rice, maize and sorghum. Eight -encoded proteins (MeGATAs) analysed were all localized in the nucleus. Some MeGATAs had potentials of binding ligands and/or enzyme activity. One pair of tandem-duplicated and 30 pairs of whole genome-duplicated s were found. Fourteen s showed low or no expression in the tissues. Nine analysed s showed expression responses to abiotic stresses and exogenous phytohormones. Three groups of MeGATA protein interactions were found. Fifty-three miRNAs which can target 18 s were identified. Eight MeGATAs were found to target other 292 cassava genes, which were directed to radial pattern formation and phyllome development by gene ontology enrichment, and autophagy by Kyoto Encyclopaedia of Genes and Genomes enrichment. These data suggest that s are functional generalists in interactions between cassava growth and development, abiotic stresses and starch metabolism.

摘要

对共有DNA序列(A/T)GATA(A/G)具有DNA结合偏好的蛋白质属于GATA转录因子家族,在植物中参与广泛的生物学过程。木薯是一种重要的粮食作物,其贮藏根中淀粉产量很高。然而,关于木薯中含GATA结构域的基因知之甚少。在本研究中发现了36个木薯含GATA结构域的基因,编号为MeGATA1到MeGATA36。一些MeGATA基因与拟南芥、杨树、马铃薯、水稻、玉米和高粱的直系同源基因存在共线关系。分析的8个MeGATA编码蛋白均定位于细胞核。一些MeGATA蛋白具有结合配体和/或酶活性的潜力。发现了一对串联重复的MeGATA基因和30对全基因组重复的MeGATA基因。14个MeGATA基因在这些组织中表达水平较低或不表达。9个分析的MeGATA基因显示出对非生物胁迫和外源植物激素的表达响应。发现了三组MeGATA蛋白相互作用。鉴定出53个可靶向18个MeGATA基因的miRNA。发现8个MeGATA基因可靶向其他292个木薯基因,通过基因本体富集分析,这些基因与径向模式形成和叶序发育有关,通过京都基因与基因组百科全书富集分析,这些基因与自噬有关。这些数据表明,MeGATA基因在木薯生长发育、非生物胁迫和淀粉代谢之间的相互作用中具有多种功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e733/9840210/cca232cde703/plac057_fig1.jpg

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