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有多少个 Sirtuin 基因?脊椎动物 Sirtuin 基因的进化及新家族成员的描述。

How Many Sirtuin Genes Are Out There? Evolution of Sirtuin Genes in Vertebrates With a Description of a New Family Member.

机构信息

Integrative Biology Group, Universidad Austral de Chile, Valdivia, Chile.

Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile.

出版信息

Mol Biol Evol. 2023 Feb 3;40(2). doi: 10.1093/molbev/msad014.

Abstract

Studying the evolutionary history of gene families is a challenging and exciting task with a wide range of implications. In addition to exploring fundamental questions about the origin and evolution of genes, disentangling their evolution is also critical to those who do functional/structural studies to allow a deeper and more precise interpretation of their results in an evolutionary context. The sirtuin gene family is a group of genes that are involved in a variety of biological functions mostly related to aging. Their duplicative history is an open question, as well as the definition of the repertoire of sirtuin genes among vertebrates. Our results show a well-resolved phylogeny that represents an improvement in our understanding of the duplicative history of the sirtuin gene family. We identified a new sirtuin gene family member (SIRT3.2) that was apparently lost in the last common ancestor of amniotes but retained in all other groups of jawed vertebrates. According to our experimental analyses, elephant shark SIRT3.2 protein is located in mitochondria, the overexpression of which leads to an increase in cellular levels of ATP. Moreover, in vitro analysis demonstrated that it has deacetylase activity being modulated in a similar way to mammalian SIRT3. Our results indicate that there are at least eight sirtuin paralogs among vertebrates and that all of them can be traced back to the last common ancestor of the group that existed between 676 and 615 millions of years ago.

摘要

研究基因家族的进化历史是一项具有广泛意义的具有挑战性和令人兴奋的任务。除了探索关于基因起源和进化的基本问题外,阐明它们的进化对于那些进行功能/结构研究的人也至关重要,这可以使他们在进化背景下更深入、更准确地解释他们的结果。Sirtuin 基因家族是一组参与多种生物学功能的基因,这些功能大多与衰老有关。它们的重复历史是一个悬而未决的问题,以及脊椎动物中 Sirtuin 基因谱的定义也是一个悬而未决的问题。我们的研究结果显示出一个分辨率良好的系统发育树,这代表着我们对 Sirtuin 基因家族重复历史的理解有所提高。我们鉴定了一个新的 Sirtuin 基因家族成员(SIRT3.2),它显然在羊膜动物的最近共同祖先中丢失了,但在所有其他有颌脊椎动物中都保留了下来。根据我们的实验分析,象鲨 SIRT3.2 蛋白位于线粒体中,其过表达会导致细胞内 ATP 水平增加。此外,体外分析表明它具有去乙酰化酶活性,并且其活性的调节方式与哺乳动物 SIRT3 相似。我们的研究结果表明,脊椎动物中至少存在 8 个 Sirtuin 基因的旁系同源物,并且它们都可以追溯到存在于 6.76 亿至 6.15 亿年前的该组的最后共同祖先。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b57/9897032/c5c54a2b1ccd/msad014f1.jpg

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