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膳食芳樟醇的耐受性主要涉及利用 SMRT 测序和 RNA-seq 在 Pagiophloeus tsushimanus(鞘翅目:象甲科)幼虫中共同表达细胞色素 P450 和角质蛋白。

Tolerance to dietary linalool primarily involves co-expression of cytochrome P450s and cuticular proteins in Pagiophloeus tsushimanus (Coleoptera: Curculionidae) larvae using SMRT sequencing and RNA-seq.

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, China.

College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu, China.

出版信息

BMC Genomics. 2023 Jan 19;24(1):34. doi: 10.1186/s12864-023-09117-7.

Abstract

BACKGROUND

Pagiophloeus tsushimanus (Coleoptera: Curculionidae), an emerging forest pest exclusively infesting camphor trees, has recently caused severe ecological and economic damage in localized areas in China. Its population outbreak depends largely on the capacity to overcome the pressure of terpenoid-derived metabolites (e.g. linalool) from camphor trees. At present, the molecular basis of physiological adaptation of P. tsushimanus to dietary linalool is poorly understood, and there is no available reference genome or transcriptome.

RESULTS

Herein, we constructed the transcriptome profiling of P. tsushimanus larvae reared on linalool-infused diets using RNA sequencing and single-molecule real-time sequencing. A total of 20,325 high-quality full-length transcripts were identified as a reference transcriptome, of which 14,492 protein-coding transcripts including 130 transcription factors (TFs), and 5561 long non-coding RNAs (lncRNAs) were detected. Also, 30 alternative splicing events and 8049 simple sequence repeats were captured. Gene ontology enrichment of differential expressed transcripts revealed that overall up-regulation of both cytochrome P450s (CYP450s) and cuticular proteins (CPs), was the primary response characteristic against dietary linalool. Other physiological effects possibly caused by linalool exposure, such as increase in Reactive Oxygen Species (ROS) and hormetic stimulation, were compensated by a handful of induced genes encoding antioxidases, heat shock proteins (HSPs), juvenile hormone (JH) epoxide hydrolases, and digestive enzymes. Additionally, based on co-expression networks analysis, a diverse array of hub lncRNAs and TFs co-expressed with CYP450s and CPs were screened as the potential gene regulators. Temporal expression of candidate transcripts determined by quantitative real-time PCR also indicated a cooperative relationship between the inductions of CYP450s and CPs upon exposure to linalool.

CONCLUSIONS

Our present study provides an important transcriptome resource of P. tsushimanus, and lays a valuable foundation for understanding how this specialist pest copes with chemical challenges in its specific host environments.

摘要

背景

樟红长角萤(鞘翅目:象甲科)是一种新兴的森林害虫,专门侵害樟树,最近在中国局部地区造成了严重的生态和经济损失。其种群爆发在很大程度上取决于克服樟树萜类衍生代谢物(如芳樟醇)压力的能力。目前,樟红长角萤幼虫对芳樟醇饮食的生理适应的分子基础理解甚少,也没有可用的参考基因组或转录组。

结果

本文利用 RNA 测序和单分子实时测序构建了樟红长角萤幼虫在芳樟醇饲料饲养下的转录组图谱。共鉴定出 20325 条高质量全长转录本作为参考转录组,其中包括 14492 个蛋白编码转录本,包括 130 个转录因子(TFs)和 5561 个长非编码 RNA(lncRNA),还捕获了 30 个可变剪接事件和 8049 个简单序列重复。差异表达转录本的基因本体富集分析表明,对膳食芳樟醇的主要反应特征是细胞色素 P450s(CYP450s)和角质蛋白(CPs)的整体上调。暴露于芳樟醇可能引起的其他生理效应,如活性氧(ROS)增加和应激刺激,通过少数诱导基因编码抗氧化酶、热休克蛋白(HSPs)、保幼激素(JH)环氧化物水解酶和消化酶得到补偿。此外,基于共表达网络分析,筛选出与 CYP450s 和 CPs 共表达的多种枢纽 lncRNA 和 TF,作为潜在的基因调节剂。通过定量实时 PCR 确定候选转录物的时间表达也表明 CYP450s 和 CPs 的诱导在暴露于芳樟醇时存在协同关系。

结论

本研究提供了樟红长角萤的重要转录组资源,为了解这种专食性害虫如何应对其特定宿主环境中的化学挑战奠定了有价值的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/667a/9854079/27c1f6bd41c5/12864_2023_9117_Fig1_HTML.jpg

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