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西番莲科基因组草图注释显示, -位点在金虎尾亚科从西番莲亚科分化后逐步进化。

Annotation of the (Passifloraceae) Draft Genome Reveals the -Locus Evolved after the Divergence of Turneroideae from Passifloroideae in a Stepwise Manner.

作者信息

Henning Paige M, Roalson Eric H, Mir Wali, McCubbin Andrew G, Shore Joel S

机构信息

School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA.

Center for Genomic Science Innovation, University of Wisconsin Madison, 425 Henry Mall, Madison, WI 53706-1577, USA.

出版信息

Plants (Basel). 2023 Jan 7;12(2):286. doi: 10.3390/plants12020286.

Abstract

A majority of species (Passifloraceae) exhibit distyly, a reproductive system involving both self-incompatibility and reciprocal herkogamy. This system differs from self-incompatibility in species. The genetic basis of distyly in is a supergene, restricted to the -morph, and containing three -genes. How supergenes and distyly evolved in , and the other Angiosperm families exhibiting distyly remain largely unknown. Unraveling the evolutionary origins in requires the generation of genomic resources and extensive phylogenetic analyses. Here, we present the annotated draft genome of the S-morph of distylous . Our annotation allowed for phylogenetic analyses of the three -genes' families across 56 plant species ranging from non-seed plants to eudicots. In addition to the phylogenetic analysis, we identified the three -genes' closest paralogs in two species of . Our analyses suggest that the -locus evolved after the divergence of and . Finally, to provide insights into the neofunctionalization of the -genes, we compared expression patterns of the -genes with close paralogs in and . The annotation of the genome will provide a useful resource for future comparative work. Additionally, this work has provided insights into the convergent nature of distyly and the origin of supergenes.

摘要

大多数西番莲科物种表现出花柱异长现象,这是一种涉及自交不亲和性和交互异位性的生殖系统。该系统与其他物种的自交不亲和性不同。西番莲科花柱异长的遗传基础是一个超级基因,仅限于S-形态,且包含三个S-基因。超级基因和花柱异长现象在西番莲科以及其他表现出花柱异长的被子植物科中是如何进化的,目前仍 largely unknown。要弄清楚西番莲科的进化起源,需要生成基因组资源并进行广泛的系统发育分析。在这里,我们展示了花柱异长的西番莲S-形态的注释基因组草图。我们的注释使得能够对从非种子植物到真双子叶植物的56种植物的三个S-基因家族进行系统发育分析。除了系统发育分析,我们还在两种西番莲属植物中鉴定出了这三个S-基因最接近的旁系同源基因。我们的分析表明,S-位点是在西番莲属和其他属分化之后进化而来的。最后,为了深入了解S-基因的新功能化,我们比较了西番莲中S-基因与相近旁系同源基因的表达模式。西番莲基因组的注释将为未来的比较研究提供有用的资源。此外,这项工作为花柱异长的趋同性质和超级基因的起源提供了见解。

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