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通过 HRP/Amplex Red 测定法观察 LPMO 反应。

Looking at LPMO reactions through the lens of the HRP/Amplex Red assay.

机构信息

Faculty of Chemistry, Biotechnology and Food Science, NMBU-Norwegian University of Life Sciences, Ås, Norway.

Faculty of Chemistry, Biotechnology and Food Science, NMBU-Norwegian University of Life Sciences, Ås, Norway.

出版信息

Methods Enzymol. 2023;679:163-189. doi: 10.1016/bs.mie.2022.08.049. Epub 2022 Dec 26.

Abstract

Lytic polysaccharide monooxygenases (LPMOs) are unique redox enzymes capable of disrupting the crystalline surfaces of industry-relevant recalcitrant polysaccharides, such as chitin and cellulose. Historically, LPMOs were thought to be slow enzymes relying on O as the co-substrate, but it is now clear that these enzymes prefer HO, allowing for fast depolymerization of polysaccharides through a peroxygenase reaction. Thus, quantifying HO in LPMO reaction set-ups is of a great interest. The horseradish peroxidase (HRP)/Amplex Red (AR) assay is one of the most popular and accessible tools for measuring hydrogen peroxide. This assay has been used in various types of biological and biochemical studies, including LPMO research, but suffers from pitfalls that need to be accounted for. In this Chapter, we discuss this method and its use for assessing the often rate-limiting in situ formation of HO in LPMO reactions. We show that, after accounting for multiple potential side reactions, quantitative data on HO production obtained with the HRP/Amplex Red assay provide useful clues for understanding the catalytic activity of LPMOs, including the impact of reductants and transition metal ions.

摘要

溶细胞单加氧酶(LPMOs)是一类独特的氧化还原酶,能够破坏甲壳素和纤维素等具有工业应用价值的、结构稳定的多糖的晶体表面。历史上,人们认为 LPMOs 是一种缓慢的酶,其依赖 O 作为共底物,但现在清楚的是,这些酶更倾向于 HO,通过过氧化物酶反应实现多糖的快速解聚。因此,量化 LPMO 反应体系中的 HO 具有重要意义。辣根过氧化物酶(HRP)/安普乐猩红(AR)测定法是一种最受欢迎和易于使用的测量过氧化氢的工具。该测定法已用于各种类型的生物和生化研究,包括 LPMO 研究,但存在需要考虑的缺陷。在本章中,我们讨论了该方法及其在评估 LPMO 反应中 HO 原位形成这一通常限速步骤中的应用。我们表明,在考虑了多个潜在的副反应后,HRP/安普乐猩红测定法获得的 HO 生成的定量数据为理解 LPMOs 的催化活性提供了有用的线索,包括还原剂和过渡金属离子的影响。

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