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山核桃(Carya cathayensis Sarg.)中家族基因在各种非生物胁迫和嫁接条件下的全基因组鉴定与表达分析

Genome-wide identification and expression analysis of family genes in Chinese hickory ( Sarg.) Under various abiotic stresses and grafting.

作者信息

Yang Ying, Wang Jiayan, Xu Yan, Abbas Farhat, Xu Dongbin, Tao Shenchen, Xie Xiaoting, Song Feng, Huang Qiaoyu, Sharma Anket, Zheng Luqing, Yan Daoliang, Wang Xiaofei, Zheng Bingsong, Yuan Huwei, Wu Rongling, He Yi

机构信息

State Key Laboratory of Subtropical Silviculture, Zhejiang Agriculture and Forestry (A&F) University, Hangzhou, China.

Zhejiang Provincial Key Laboratory of Forest Aromatic Plants-based Healthcare Functions, Zhejiang Agriculture and Forestry (A&F) University, Hangzhou, China.

出版信息

Front Plant Sci. 2023 Jan 5;13:1060965. doi: 10.3389/fpls.2022.1060965. eCollection 2022.

DOI:10.3389/fpls.2022.1060965
PMID:36684757
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9849883/
Abstract

Auxin is essential for regulating plant growth and development as well as the response of plants to abiotic stresses. AUX/LAX proteins are auxin influx transporters belonging to the amino acid permease family of proton-driven transporters, and are involved in the transport of indole-3-acetic acid (IAA). However, how genes respond to abiotic stresses in Chinese hickory is less studied. For the first time identification, structural characteristics as well as gene expression analysis of the gene family in Chinese hickory were conducted by using techniques of gene cloning and real-time fluorescent quantitative PCR. Eight were identified in Chinese hickory, all of which had the conserved structural characteristics of . CcAUX/LAXs were most closely related to their homologous proteins in , which was in consistence with their common taxonomic character of woody trees. exhibited different expression profiles in different tissues, indicating their varying roles during growth and development. A number of light-, hormone-, and abiotic stress responsive -acting regulatory elements were detected on the promoters of genes. genes responded differently to drought and salt stress treatments to varying degrees. Furthermore, genes exhibited complex expression changes during Chinese hickory grafting. These findings not only provide a valuable resource for further functional validation of , but also contribute to a better understanding of their potential regulatory functions during grafting and abiotic stress treatments in Chinese hickory.

摘要

生长素对于调节植物生长发育以及植物对非生物胁迫的响应至关重要。AUX/LAX蛋白是属于质子驱动转运体氨基酸通透酶家族的生长素内流转运体,参与吲哚 - 3 - 乙酸(IAA)的转运。然而,山核桃中基因如何响应非生物胁迫的研究较少。首次利用基因克隆和实时荧光定量PCR技术对山核桃中该基因家族进行了鉴定、结构特征分析以及基因表达分析。在山核桃中鉴定出8个,它们均具有该家族保守的结构特征。CcAUX/LAXs与其在杨树中的同源蛋白关系最为密切,这与其作为木本植物的共同分类特征一致。它们在不同组织中表现出不同的表达模式,表明它们在生长发育过程中发挥着不同的作用。在这些基因的启动子上检测到许多光、激素和非生物胁迫响应顺式作用调控元件。这些基因对干旱和盐胁迫处理有不同程度的不同响应。此外,在山核桃嫁接过程中这些基因表现出复杂的表达变化。这些发现不仅为进一步功能验证该基因家族提供了宝贵资源,也有助于更好地理解它们在山核桃嫁接和非生物胁迫处理过程中的潜在调控功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/477b94de67e6/fpls-13-1060965-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/8ea0f397962a/fpls-13-1060965-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/7c9e3221abb7/fpls-13-1060965-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/8f4c406831e1/fpls-13-1060965-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/0e593c93018d/fpls-13-1060965-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/1d02bb8608c1/fpls-13-1060965-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/229940aa4b2f/fpls-13-1060965-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/859e455067be/fpls-13-1060965-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/477b94de67e6/fpls-13-1060965-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/8ea0f397962a/fpls-13-1060965-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/7c9e3221abb7/fpls-13-1060965-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/8f4c406831e1/fpls-13-1060965-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/0e593c93018d/fpls-13-1060965-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/1d02bb8608c1/fpls-13-1060965-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/229940aa4b2f/fpls-13-1060965-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/859e455067be/fpls-13-1060965-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a144/9849883/477b94de67e6/fpls-13-1060965-g008.jpg

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