TRON - Translational Oncology, Johannes Gutenberg University, Freiligrathstrasse 12, 55131 Mainz, Germany.
TRON - Translational Oncology, Johannes Gutenberg University, Freiligrathstrasse 12, 55131 Mainz, Germany; BioNTech SE, An der Goldgrube 12, 55131 Mainz, Germany.
Mol Ther. 2023 Jun 7;31(6):1636-1646. doi: 10.1016/j.ymthe.2023.01.019. Epub 2023 Jan 23.
Trans-amplifying RNA (taRNA) is a split-vector derivative of self-amplifying RNA (saRNA) and a promising vaccine platform. taRNA combines a non-replicating mRNA encoding an alphaviral replicase and a transreplicon (TR) RNA coding for the antigen. Upon translation, the replicase amplifies the antigen-coding TR, thereby requiring minimal amounts of TR for immunization. TR amplification by the replicase follows a complex mechanism orchestrated by genomic and subgenomic promoters (SGPs) and generates genomic and subgenomic amplicons whereby only the latter are translated into therapeutic proteins. This complexity merits simplification to improve the platform. Here, we eliminated the SGP and redesigned the 5' untranslated region to shorten the TR (STR), thereby enabling translation of the remaining genomic amplicon. We then applied a directed evolution approach to select for faster replicating STRs. The resulting evolved STR (eSTR) had acquired A-rich 5' extensions, which improved taRNA expression thanks to accelerated replication. Consequently, we reduced the minimal required TR amount by more than 10-fold without losing taRNA expression in vitro. Accordingly, eSTR-immunized mice developed greater antibody titers to taRNA-encoded influenza HA than TR-immunized mice. In summary, this work points the way for further optimization of taRNA by combining rational design and directed evolution.
转扩增 RNA(taRNA)是自我扩增 RNA(saRNA)的分裂载体衍生物,是一种很有前途的疫苗平台。taRNA 结合了一种非复制性的 mRNA,该 mRNA 编码一种α病毒复制酶和一种编码抗原的转复制子(TR)RNA。翻译后,复制酶扩增抗原编码的 TR,从而使免疫接种所需的 TR 量最小化。复制酶对 TR 的扩增遵循由基因组和亚基因组启动子(SGPs)协调的复杂机制,并产生基因组和亚基因组扩增子,其中只有后者被翻译成治疗蛋白。这种复杂性需要简化,以改进该平台。在这里,我们消除了 SGP 并重新设计了 5'非翻译区以缩短 TR(STR),从而能够翻译剩余的基因组扩增子。然后,我们应用定向进化方法来选择复制更快的 STR。由此产生的进化 STR(eSTR)获得了富含 A 的 5'延伸,这得益于加速复制提高了 taRNA 的表达。因此,我们在体外减少了所需的最小 TR 量超过 10 倍,而没有降低 taRNA 的表达。相应地,eSTR 免疫的小鼠对 taRNA 编码的流感 HA 的抗体滴度高于 TR 免疫的小鼠。总之,这项工作通过结合合理设计和定向进化为进一步优化 taRNA 指明了方向。
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