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利用机器学习进行有机反应机理分类

Organic reaction mechanism classification using machine learning.

作者信息

Burés Jordi, Larrosa Igor

机构信息

Department of Chemistry, The University of Manchester, Manchester, UK.

出版信息

Nature. 2023 Jan;613(7945):689-695. doi: 10.1038/s41586-022-05639-4. Epub 2023 Jan 25.

DOI:10.1038/s41586-022-05639-4
PMID:36697863
Abstract

A mechanistic understanding of catalytic organic reactions is crucial for the design of new catalysts, modes of reactivity and the development of greener and more sustainable chemical processes. Kinetic analysis lies at the core of mechanistic elucidation by facilitating direct testing of mechanistic hypotheses from experimental data. Traditionally, kinetic analysis has relied on the use of initial rates, logarithmic plots and, more recently, visual kinetic methods, in combination with mathematical rate law derivations. However, the derivation of rate laws and their interpretation require numerous mathematical approximations and, as a result, they are prone to human error and are limited to reaction networks with only a few steps operating under steady state. Here we show that a deep neural network model can be trained to analyse ordinary kinetic data and automatically elucidate the corresponding mechanism class, without any additional user input. The model identifies a wide variety of classes of mechanism with outstanding accuracy, including mechanisms out of steady state such as those involving catalyst activation and deactivation steps, and performs excellently even when the kinetic data contain substantial error or only a few time points. Our results demonstrate that artificial-intelligence-guided mechanism classification is a powerful new tool that can streamline and automate mechanistic elucidation. We are making this model freely available to the community and we anticipate that this work will lead to further advances in the development of fully automated organic reaction discovery and development.

摘要

对催化有机反应的机理理解对于新型催化剂的设计、反应活性模式以及更绿色、更可持续化学过程的发展至关重要。动力学分析通过促进从实验数据直接检验机理假设,处于机理阐明的核心位置。传统上,动力学分析依赖于使用初始速率、对数图,以及最近的可视化动力学方法,并结合数学速率定律推导。然而,速率定律的推导及其解释需要大量数学近似,因此容易出现人为误差,并且仅限于在稳态下仅有几步反应的反应网络。在此,我们表明可以训练一个深度神经网络模型来分析普通动力学数据,并自动阐明相应的机理类别,而无需任何额外的用户输入。该模型以极高的准确率识别出各种各样的机理类别,包括非稳态机理,如涉及催化剂活化和失活步骤的机理,并且即使动力学数据包含大量误差或只有几个时间点时,也能表现出色。我们的结果表明,人工智能引导的机理分类是一种强大的新工具,可简化和自动化机理阐明过程。我们正在向科学界免费提供此模型,并且预计这项工作将推动全自动有机反应发现与开发取得进一步进展。

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