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通过程序性裂解控制微生物群落的电遗传信号传导与信息传播

Electrogenetic signaling and information propagation for controlling microbial consortia via programmed lysis.

作者信息

VanArsdale Eric, Navid Ali, Chu Monica J, Halvorsen Tiffany M, Payne Gregory F, Jiao Yongqin, Bentley William E, Yung Mimi C

机构信息

Fischell Department of Bioengineering, University of Maryland, College Park, Maryland, USA.

Institute of Bioscience and Biotechnology Research, University of Maryland, College Park, Maryland, USA.

出版信息

Biotechnol Bioeng. 2023 May;120(5):1366-1381. doi: 10.1002/bit.28337. Epub 2023 Feb 9.

Abstract

To probe signal propagation and genetic actuation in microbial consortia, we have coopted the components of both redox and quorum sensing (QS) signaling into a communication network for guiding composition by "programming" cell lysis. Here, we use an electrode to generate hydrogen peroxide as a redox cue that determines consortia composition. The oxidative stress regulon of Escherichia coli, OxyR, is employed to receive and transform this signal into a QS signal that coordinates the lysis of a subpopulation of cells. We examine a suite of information transfer modalities including "monoculture" and "transmitter-receiver" models, as well as a series of genetic circuits that introduce time-delays for altering information relay, thereby expanding design space. A simple mathematical model aids in developing communication schemes that accommodate the transient nature of redox signals and the "collective" attributes of QS signals. We suggest this platform methodology will be useful in understanding and controlling synthetic microbial consortia for a variety of applications, including biomanufacturing and biocontainment.

摘要

为了探究微生物群落中的信号传播和基因激活,我们已将氧化还原和群体感应(QS)信号的组件整合到一个通信网络中,通过“编程”细胞裂解来指导群落组成。在此,我们使用电极产生过氧化氢作为氧化还原信号,以确定群落组成。利用大肠杆菌的氧化应激调节因子OxyR来接收该信号,并将其转化为协调细胞亚群裂解的QS信号。我们研究了一系列信息传递模式,包括“单一培养”和“发射器-接收器”模型,以及一系列引入时间延迟以改变信息传递的遗传电路,从而扩展了设计空间。一个简单的数学模型有助于开发适应氧化还原信号瞬态特性和QS信号“集体”属性的通信方案。我们认为这种平台方法将有助于理解和控制用于各种应用(包括生物制造和生物遏制)的合成微生物群落。

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