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通过连续劳厄衍射成像的铁硫簇的自旋耦合电子密度

Spin-Coupled Electron Densities of Iron-Sulfur Cluster Imaged by Serial Laue Diffraction.

作者信息

Ren Zhong, Zhang Fan, Kang Weijia, Wang Cong, Shin Heewhan, Zeng Xiaoli, Gunawardana Semini, Bowatte Kalinga, Krau Ü Norbert, Lamparter Tilman, Yang Xiaojing

出版信息

bioRxiv. 2023 Jan 10:2023.01.09.523341. doi: 10.1101/2023.01.09.523341.

Abstract

Iron-sulfur clusters are inorganic cofactors found in many proteins involved in fundamental biological processes including DNA processing. The prokaryotic DNA repair enzyme PhrB, a member of the protein family of cryptochromes and photolyases, carries a four-iron-four-sulfur cluster [4Fe4S] in addition to the catalytic cofactor flavin adenine dinucleotide (FAD) and a second pigment 6,7-dimethyl-8-ribityllumazine (DMRL). The light-induced redox reactions of this multi-cofactor protein complex were recently shown as two interdependent photoreductions of FAD and DMRL mediated by the [4Fe4S] cluster functioning as an electron cache to hold a fine balance of electrons. Here, we apply the more traditional temperature-scan cryo-trapping technique in protein crystallography and the newly developed technology of serial Laue diffraction at room temperature. These diffraction methods in dynamic crystallography enable us to capture strong signals of electron density changes in the [4Fe4S] cluster that depict quantized electronic movements. The mixed valence layers of the [4Fe4S] cluster due to spin coupling and their dynamic responses to light illumination are observed directly in our difference maps between its redox states. These direct observations of the quantum effects in a protein bound iron-sulfur cluster have thus opened a window into the mechanistic understanding of metal clusters in biological systems.

摘要

铁硫簇是在许多参与包括DNA加工在内的基本生物过程的蛋白质中发现的无机辅因子。原核生物DNA修复酶PhrB是隐花色素和光解酶蛋白家族的成员,除了催化辅因子黄素腺嘌呤二核苷酸(FAD)和第二种色素6,7-二甲基-8-核糖基喋啶(DMRL)外,还携带一个四铁四硫簇[4Fe4S]。这种多辅因子蛋白复合物的光诱导氧化还原反应最近被证明是由作为电子缓存的[4Fe4S]簇介导的FAD和DMRL的两个相互依赖的光还原反应,以保持电子的精细平衡。在这里,我们应用蛋白质晶体学中更传统的温度扫描低温捕获技术和新开发的室温串行劳厄衍射技术。动态晶体学中的这些衍射方法使我们能够捕获[4Fe4S]簇中电子密度变化的强信号,这些信号描绘了量子化的电子运动。在我们的氧化还原状态差异图中直接观察到了由于自旋耦合导致的[4Fe4S]簇的混合价层及其对光照的动态响应。因此,对蛋白质结合的铁硫簇中量子效应的这些直接观察为理解生物系统中的金属簇机制打开了一扇窗口。

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