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弥漫性大B细胞淋巴瘤铜死亡相关预后模型的构建与验证

Development and validation of a cuproptosis-associated prognostic model for diffuse large B-cell lymphoma.

作者信息

Zhang Bingxin, Zhang Tianyu, Zheng Ziwei, Lin Zhili, Wang Quanqiang, Zheng Dong, Chen Zixing, Ma Yongyong

机构信息

Department of Hematology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China.

Department of Hepatobiliary Surgery, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China.

出版信息

Front Oncol. 2023 Jan 12;12:1020566. doi: 10.3389/fonc.2022.1020566. eCollection 2022.

Abstract

Diffuse large B-cell lymphoma (DLBCL) is a highly heterogeneous disease. Therefore, more reliable biomarkers are required to better predict the prognosis of DLBCL. Cuproptosis is a novel identified form of programmed cell death (PCD) that is different from oxidative stress-related cell death (e.g., apoptosis, ferroptosis, and necroptosis) by Tsvetkov and colleagues in a recent study released in Science. Cuproptosis is copper-dependent PCD that is closely tied to mitochondrial metabolism. However, the prognostic value of cuproptosis-related genes (CRGs) in DLBCL remains to be further elucidated. In the present study, we systematically evaluated the molecular changes of CRGs in DLBCL and found them to be associated with prognosis. Subsequently, based on the expression profiles of CRGs, we characterized the heterogeneity of DLBCL by identifying two distinct subtypes using consensus clustering. Two isoforms exhibited different survival, biological functions, chemotherapeutic drug sensitivity, and immune microenvironment. After identifying differentially expressed genes (DEGs) between CRG clusters, we built a prognostic model with the Least absolute shrinkage and selection operator (LASSO) Cox regression analysis and validated its prognostic value by Cox regression analysis, Kaplan-Meier curves, and receiver operating characteristic (ROC) curves. In addition, the risk score can predict clinical characteristics, levels of immune cell infiltration, and prognosis. Furthermore, a nomogram incorporating clinical features and risk score was generated to optimize risk stratification and quantify risk assessment. Compared to the International Prognostic Index (IPI), the nomogram has demonstrated more accuracy in survival prediction. Furthermore, we validated the prognostic gene expression levels through external experiments. In conclusion, cuproptosis-related gene signature can serve as a potential prognostic predictor in DLBCL patients and may provide new insights into cancer therapeutic targets.

摘要

弥漫性大B细胞淋巴瘤(DLBCL)是一种高度异质性疾病。因此,需要更可靠的生物标志物来更好地预测DLBCL的预后。铜死亡是一种新发现的程序性细胞死亡(PCD)形式,与Tsvetkov及其同事在最近发表于《科学》杂志的一项研究中所提到的氧化应激相关细胞死亡(如凋亡、铁死亡和坏死性凋亡)不同。铜死亡是一种依赖铜的PCD,与线粒体代谢密切相关。然而,铜死亡相关基因(CRGs)在DLBCL中的预后价值仍有待进一步阐明。在本研究中,我们系统地评估了DLBCL中CRGs的分子变化,并发现它们与预后相关。随后,基于CRGs的表达谱,我们通过一致性聚类识别出两种不同的亚型,从而对DLBCL的异质性进行了表征。两种亚型表现出不同的生存率、生物学功能、化疗药物敏感性和免疫微环境。在识别出CRG簇之间的差异表达基因(DEGs)后,我们使用最小绝对收缩和选择算子(LASSO)Cox回归分析构建了一个预后模型,并通过Cox回归分析、Kaplan-Meier曲线和受试者工作特征(ROC)曲线验证了其预后价值。此外,风险评分可以预测临床特征、免疫细胞浸润水平和预后。此外,我们生成了一个结合临床特征和风险评分的列线图,以优化风险分层并量化风险评估。与国际预后指数(IPI)相比,该列线图在生存预测方面表现出更高的准确性。此外,我们通过外部实验验证了预后基因的表达水平。总之,铜死亡相关基因特征可作为DLBCL患者潜在的预后预测指标,并可能为癌症治疗靶点提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3482/9877310/b85efb75e6d7/fonc-12-1020566-g001.jpg

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