Mol Praseeda, Balaya Rex Devasahayam Arokia, Dagamajalu Shobha, Babu Sreeranjini, Chandrasekaran Pavithra, Raghavan Reshma, Suresh Sneha, Ravishankara Namitha, Raju Anu Hemalatha, Nair Bipin, Modi Prashant Kumar, Mahadevan Anita, Prasad Thottethodi Subrahmanya Keshava, Raju Rajesh
Institute of Bioinformatics, International Technology Park, Whitefield, Bangalore, 560066, India.
Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam, 690525, India.
J Cell Commun Signal. 2023 Sep;17(3):1089-1095. doi: 10.1007/s12079-023-00726-1. Epub 2023 Jan 30.
Glial cell line-derived neurotrophic factor (GDNF) signals through a multi-component receptor system predominantly consisting of glycosyl-phosphatidylinositol-anchored GDNF family receptor alpha-1 (GFRα1) and the Rearranged during transfection (RET) receptor tyrosine kinase. GDNF/RET signaling is vital to the central and peripheral nervous system, kidney morphogenesis, and spermatogenesis. In addition, the dysregulation of the GDNF/RET signaling has been implicated in the pathogenesis of cancers. Despite the extensive research on GDNF/RET signaling, a molecular network of reactions induced by GDNF reported across the published literature. However, a comprehensive GDNF/RET pathway resource is currently unavailable. We describe an integrated signaling pathway reaction map of GDNF/RET consisting of 1151 molecular reactions. These include information pertaining to 52 molecular association events, 70 enzyme catalysis events, 36 activation/inhibition events, 22 translocation events, 856 gene regulation events, and 115 protein-level expression events induced by GDNF in diverse cell types. We developed a comprehensive GDNF/RET signaling network map based on these molecular reactions. The pathway map was made accessible through WikiPathways database ( https://www.wikipathways.org/index.php/Pathway:WP5143 ). Biocuration and development of gene regulatory network map of GDNF/RET signaling pathway.
胶质细胞系源性神经营养因子(GDNF)通过一个主要由糖基磷脂酰肌醇锚定的GDNF家族受体α-1(GFRα1)和转染时重排(RET)受体酪氨酸激酶组成的多组分受体系统发出信号。GDNF/RET信号传导对中枢和外周神经系统、肾脏形态发生以及精子发生至关重要。此外,GDNF/RET信号传导的失调与癌症的发病机制有关。尽管对GDNF/RET信号传导进行了广泛研究,但已发表文献中报道的由GDNF诱导的反应分子网络并不完整。然而,目前尚无全面的GDNF/RET信号通路资源。我们描述了一个由1151个分子反应组成的GDNF/RET综合信号通路反应图谱。这些反应包括与52个分子缔合事件、70个酶催化事件、36个激活/抑制事件、22个易位事件、856个基因调控事件以及GDNF在不同细胞类型中诱导的115个蛋白质水平表达事件相关的信息。我们基于这些分子反应绘制了一个全面的GDNF/RET信号网络图谱。该通路图谱可通过WikiPathways数据库(https://www.wikipathways.org/index.php/Pathway:WP5143)获取。GDNF/RET信号通路基因调控网络图谱的生物注释与绘制。