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蛋白质的暮尔本后翻译修饰:细胞氧化还原过程和暮尔酶介导的代谢蛋白质组学。

Murburn posttranslational modifications of proteins: Cellular redox processes and murzyme-mediated metabolo-proteomics.

机构信息

Satyamjayatu: The Science & Ethics Foundation, Kulappully, Kerala, India.

出版信息

J Cell Physiol. 2024 Mar;239(3):e30954. doi: 10.1002/jcp.30954. Epub 2023 Jan 30.

DOI:10.1002/jcp.30954
PMID:36716112
Abstract

Murburn concept constitutes the thesis that diffusible reactive species or DRS are obligatorily involved in routine metabolic and physiological activities. Murzymes are defined as biomolecules/proteins that generate/modulate/sustain/utilize DRS. Murburn posttranslational modifications (PTMs) result because murburn/murzyme functionalism is integral to cellular existence. Cells must incorporate the inherently stochastic nature of operations mediated by DRS. Due to the earlier/inertial stigmatic perception that DRS are mere agents of chaos, several such outcomes were either understood as deterministic modulations sponsored by house-keeping enzymes or deemed as unregulated nonenzymatic events resulting out of "oxidative stress". In the current review, I dispel the myths around DRS-functions, and undertake systematic parsing and analyses of murburn modifications of proteins. Although it is impossible to demarcate all PTMs into the classical or murburn modalities, telltale signs of the latter are evident from the relative inaccessibility of the locus, non-specificities and mechanistic details. It is pointed out that while many murburn PTMs may be harmless, some others could have deleterious or beneficial physiological implications. Some details of reversible/irreversible modifications of amino acid residues and cofactors that may be subjected to phosphorylation, halogenation, glycosylation, alkylation/acetylation, hydroxylation/oxidation, etc. are listed, along with citations of select proteins where such modifications have been reported. The contexts of these modifications and their significance in (patho)physiology/aging and therapy are also presented. With more balanced explorations and statistically verified data, a definitive understanding of normal versus pathological contexts of murburn modifications would be obtainable in the future.

摘要

Murburn 概念认为,扩散反应性物质(DRS)必然参与常规代谢和生理活动。Murzymes 被定义为产生/调节/维持/利用 DRS 的生物分子/蛋白质。Murburn 翻译后修饰(PTM)是由于 murburn/murzyme 功能主义是细胞存在的整体。细胞必须将 DRS 介导的固有随机性质纳入其中。由于早期/惯性的偏见认为 DRS 只是混乱的代理,因此,一些这样的结果要么被理解为管家酶赞助的确定性调节,要么被认为是由于“氧化应激”而产生的不受调节的非酶事件。在本次综述中,我消除了 DRS 功能的神话,并对蛋白质的 murburn 修饰进行了系统的解析和分析。虽然不可能将所有 PTM 都划分为经典或 murburn 模式,但从相对难以接近的位置、非特异性和机制细节中可以明显看出后者的特征。指出虽然许多 murburn PTM 可能是无害的,但其他一些可能具有有害或有益的生理意义。还列出了可能发生磷酸化、卤化、糖基化、烷基化/乙酰化、羟化/氧化等修饰的氨基酸残基和辅因子的可逆/不可逆修饰的一些细节,并引用了已报道这些修饰的选择蛋白。还介绍了这些修饰的上下文及其在(病理)生理学/衰老和治疗中的意义。通过更平衡的探索和经过统计学验证的数据,未来将能够获得对 murburn 修饰的正常与病理情况的明确理解。

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