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利用紫萍的实验进化研究全基因组倍增

Studying Whole-Genome Duplication Using Experimental Evolution of Spirodela polyrhiza.

机构信息

Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.

VIB Center for Plant Systems Biology, VIB, Ghent, Belgium.

出版信息

Methods Mol Biol. 2023;2545:373-390. doi: 10.1007/978-1-0716-2561-3_19.

Abstract

In this chapter, we present the use of Spirodela polyrhiza in experiments designed to study the evolutionary impact of whole-genome duplication (WGD). We shortly introduce this duckweed species and explain why it is a suitable model for experimental evolution. Subsequently, we discuss the most relevant steps and methods in the design of a ploidy-related duckweed experiment. These steps include strain selection, ploidy determination, different methods of making polyploid duckweeds, replication, culturing conditions, preservation, and the ways to quantify phenotypic and transcriptomic change.

摘要

在本章中,我们介绍了 Spirodela polyrhiza 在旨在研究全基因组复制(WGD)进化影响的实验中的应用。我们简要介绍了这种浮萍物种,并解释了为什么它是实验进化的合适模型。随后,我们讨论了设计与倍性相关的浮萍实验中最相关的步骤和方法。这些步骤包括菌株选择、倍性测定、制作多倍体浮萍的不同方法、复制、培养条件、保存以及量化表型和转录组变化的方法。

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