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基因组和遗传网络的复制及其在环境动荡期间对进化适应和生存的潜在可能性。

The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil.

机构信息

Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent 9052, Belgium.

Center for Plant Systems Biology, VIB, Gent 9052, Belgium.

出版信息

Proc Natl Acad Sci U S A. 2023 Oct 10;120(41):e2307289120. doi: 10.1073/pnas.2307289120. Epub 2023 Oct 3.

Abstract

The importance of whole-genome duplication (WGD) for evolution is controversial. Whereas some view WGD mainly as detrimental and an evolutionary dead end, there is growing evidence that polyploidization can help overcome environmental change, stressful conditions, or periods of extinction. However, despite much research, the mechanistic underpinnings of why and how polyploids might be able to outcompete or outlive nonpolyploids at times of environmental upheaval remain elusive, especially for autopolyploids, in which heterosis effects are limited. On the longer term, WGD might increase both mutational and environmental robustness due to redundancy and increased genetic variation, but on the short-or even immediate-term, selective advantages of WGDs are harder to explain. Here, by duplicating artificially generated Gene Regulatory Networks (GRNs), we show that duplicated GRNs-and thus duplicated genomes-show higher signal output variation than nonduplicated GRNs. This increased variation leads to niche expansion and can provide polyploid populations with substantial advantages to survive environmental turmoil. In contrast, under stable environments, GRNs might be maladaptive to changes, a phenomenon that is exacerbated in duplicated GRNs. We believe that these results provide insights into how genome duplication and (auto)polyploidy might help organisms to adapt quickly to novel conditions and to survive ecological uproar or even cataclysmic events.

摘要

全基因组复制(WGD)对进化的重要性存在争议。虽然有些人认为 WGD 主要是有害的,是进化的死胡同,但越来越多的证据表明,多倍体化可以帮助生物克服环境变化、压力条件或灭绝时期。然而,尽管进行了大量研究,但关于为什么和如何在环境剧变时多倍体可能能够胜过或存活于非多倍体的机制基础仍然难以捉摸,尤其是对于同源多倍体,其中杂种优势效应受到限制。从长远来看,WGD 可能会由于冗余和增加的遗传变异而增加突变和环境稳健性,但在短期甚至即时的情况下,WGD 的选择优势更难解释。在这里,我们通过人工复制基因调控网络(GRN),表明复制的 GRN-因此复制的基因组-比非复制的 GRN 显示出更高的信号输出变化。这种增加的变化导致生态位扩展,并为多倍体种群提供了在环境动荡中生存的巨大优势。相比之下,在稳定的环境下,GRN 可能对变化不适应,这种现象在复制的 GRN 中更为加剧。我们相信,这些结果为理解基因组复制和(自)多倍体如何帮助生物快速适应新条件以及在生态动荡甚至灾难性事件中生存提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc1b/10576144/e400840f603c/pnas.2307289120fig01.jpg

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