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识别宫颈癌治疗靶点和功能通路的系统方法。

Systematic approach to identify therapeutic targets and functional pathways for the cervical cancer.

作者信息

Hasan Md Tanvir, Islam Md Rakibul, Islam Md Rezwan, Altahan Baraa Riyadh, Ahmed Kawsar, Bui Francis M, Azam Sami, Moni Mohammad Ali

机构信息

Department of Business Engineering, Ghent University, 9000 Gent, Belgium.

Department of Software Engineering, Daffodil International University (DIU), Ashulia, Savar, Dhaka, 1342, Bangladesh.

出版信息

J Genet Eng Biotechnol. 2023 Feb 1;21(1):10. doi: 10.1186/s43141-023-00469-x.

Abstract

BACKGROUND

In today's society, cancer has become a big concern. The most common cancers in women are breast cancer (BC), endometrial cancer (EC), ovarian cancer (OC), and cervical cancer (CC). CC is a type of cervix cancer that is the fourth most common cancer in women and the fourth major cause of death.

RESULTS

This research uses a network approach to discover genetic connections, functional enrichment, pathways analysis, microRNAs transcription factors (miRNA-TF) co-regulatory network, gene-disease associations, and therapeutic targets for CC. Three datasets from the NCBI's GEO collection were considered for this investigation. Then, using a comparison approach between the datasets, 315 common DEGs were discovered. The PPI network was built using a variety of combinatorial statistical approaches and bioinformatics tools, and the PPI network was then utilized to identify hub genes and critical modules.

CONCLUSION

Furthermore, we discovered that CC has specific similar links with the progression of different tumors using Gene Ontology terminology and pathway analysis. Transcription factors-gene linkages, gene-disease correlations, and the miRNA-TF co-regulatory network were revealed to have functional enrichments. We believe the candidate drugs identified in this study could be effective for advanced CC treatment.

摘要

背景

在当今社会,癌症已成为一大关注点。女性中最常见的癌症是乳腺癌(BC)、子宫内膜癌(EC)、卵巢癌(OC)和宫颈癌(CC)。CC是一种子宫颈癌,是女性中第四大常见癌症及第四大主要死因。

结果

本研究采用网络方法来发现CC的基因关联、功能富集、通路分析、微小RNA转录因子(miRNA-TF)共调控网络、基因-疾病关联及治疗靶点。本研究考虑了来自NCBI的GEO数据库的三个数据集。然后,通过数据集之间的比较方法,发现了315个共同的差异表达基因(DEG)。使用各种组合统计方法和生物信息学工具构建了蛋白质-蛋白质相互作用(PPI)网络,随后利用该PPI网络识别枢纽基因和关键模块。

结论

此外,我们使用基因本体学术语和通路分析发现CC与不同肿瘤的进展具有特定的相似联系。转录因子-基因联系、基因-疾病相关性以及miRNA-TF共调控网络被揭示具有功能富集。我们相信本研究中鉴定出的候选药物可能对晚期CC治疗有效。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e92/9892376/a207b72fa665/43141_2023_469_Fig1_HTML.jpg

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