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基因组脆弱性的进化使微生物能够分工。

Evolution of genome fragility enables microbial division of labor.

机构信息

Mathematical Institute, Leiden University, Leiden, The Netherlands.

Origins Center, Leiden, The Netherlands.

出版信息

Mol Syst Biol. 2023 Mar 9;19(3):e11353. doi: 10.15252/msb.202211353. Epub 2023 Feb 2.

Abstract

Division of labor can evolve when social groups benefit from the functional specialization of its members. Recently, a novel means of coordinating the division of labor was found in the antibiotic-producing bacterium Streptomyces coelicolor, where specialized cells are generated through large-scale genomic re-organization. We investigate how the evolution of a genome architecture enables such mutation-driven division of labor, using a multiscale computational model of bacterial evolution. In this model, bacterial behavior-antibiotic production or replication-is determined by the structure and composition of their genome, which encodes antibiotics, growth-promoting genes, and fragile genomic loci that can induce chromosomal deletions. We find that a genomic organization evolves, which partitions growth-promoting genes and antibiotic-coding genes into distinct parts of the genome, separated by fragile genomic loci. Mutations caused by these fragile sites mostly delete growth-promoting genes, generating sterile, and antibiotic-producing mutants from weakly-producing progenitors, in agreement with experimental observations. This division of labor enhances the competition between colonies by promoting antibiotic diversity. These results show that genomic organization can co-evolve with genomic instabilities to enable reproductive division of labor.

摘要

当社会群体受益于成员的功能专业化时,劳动分工就可以进化。最近,在抗生素产生菌链霉菌中发现了一种协调劳动分工的新方法,通过大规模的基因组重新组织产生专门的细胞。我们使用细菌进化的多尺度计算模型来研究基因组结构的进化如何使这种由突变驱动的劳动分工成为可能。在这个模型中,细菌的行为——抗生素的产生或复制——取决于它们的基因组的结构和组成,基因组编码抗生素、促进生长的基因和脆弱的基因组位点,这些基因组位点可以诱导染色体缺失。我们发现,一种基因组组织进化了,它将促进生长的基因和编码抗生素的基因划分到基因组的不同部分,由脆弱的基因组位点隔开。这些脆弱位点引起的突变大多删除了促进生长的基因,从弱产的前体中产生无菌和产生抗生素的突变体,这与实验观察结果一致。这种劳动分工通过促进抗生素多样性来增强群体间的竞争。这些结果表明,基因组组织可以与基因组不稳定性共同进化,从而实现生殖劳动分工。

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