Microbial Biotechnology, Institute of Biology, Leiden University, Leiden, The Netherlands.
Bioinformatics Group, Wageningen University, Wageningen, The Netherlands.
Nat Rev Microbiol. 2020 Oct;18(10):546-558. doi: 10.1038/s41579-020-0379-y. Epub 2020 Jun 1.
Actinobacteria constitute a highly diverse bacterial phylum with an unrivalled metabolic versatility. They produce most of the clinically used antibiotics and a plethora of other natural products with medical or agricultural applications. Modern 'omics'-based technologies have revealed that the genomic potential of Actinobacteria greatly outmatches the known chemical space. In this Review, we argue that combining insights into actinobacterial ecology with state-of-the-art computational approaches holds great promise to unlock this unexplored reservoir of actinobacterial metabolism. This enables the identification of small molecules and other stimuli that elicit the induction of poorly expressed biosynthetic gene clusters, which should help reinvigorate screening efforts for their precious bioactive natural products.
放线菌是一个具有高度多样性的细菌门,具有无与伦比的代谢灵活性。它们产生了大多数临床使用的抗生素和大量其他具有医学或农业应用的天然产物。现代基于“组学”的技术表明,放线菌的基因组潜力远远超过了已知的化学空间。在这篇综述中,我们认为,将放线菌生态学的见解与最先进的计算方法相结合,有望释放出这种未被探索的放线菌代谢库。这可以识别小分子和其他刺激物,诱导表达不佳的生物合成基因簇的诱导,这应该有助于重振对其珍贵生物活性天然产物的筛选工作。