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ncR2Met(lncR2metasta v2.0):一个在癌症转移事件中具有实验支持的 ncRNAs 的更新数据库。

ncR2Met (lncR2metasta v2.0): An updated database for experimentally supported ncRNAs during cancer metastatic events.

机构信息

College of Life Science and Health, Wuhan University of Science and Technology, Wuhan 430065, China.

College of Science, Wuhan University of Science and Technology, Wuhan 430065, China.

出版信息

Genomics. 2023 Mar;115(2):110569. doi: 10.1016/j.ygeno.2023.110569. Epub 2023 Feb 2.

Abstract

Non-coding RNAs (ncRNAs) are widely involved in cancer metastatic events (CMEs, e.g., cancer cell invasion, intravasation, extravasation, proliferation), which collaboratively accelerate tumor spread and cause high patient mortality. In early 2020, we developed a manually curated database named 'lncR2metasta' to provide a comprehensive repository for long ncRNA (lncRNA) regulation during CMEs. We updated this database by supplementing other two important ncRNA types, microRNAs (miRNAs) and circular RNAs (circRNAs), for their involvement during CMEs after a thorough manual curation from published studies. ncR2metasta documents 1565 lncRNA-associated, 882 miRNA-associated, and 628 circRNA-associated entries for ncRNA-CME associations during 50 CMEs across 63 human cancer subtypes. ncR2Met has a concise web interface for researchers to easily browse, search and download as well as to submit novel ncRNA-CME associations. We anticipated that it could be a valuable resource, which will significantly improve our understanding of ncRNA functions in metastasis. It is freely available at http://ncr2met.wchoda.com.

摘要

非编码 RNA(ncRNAs)广泛参与癌症转移事件(CMEs,如癌细胞侵袭、血管内渗透、血管外渗透、增殖),这些事件协同加速肿瘤扩散并导致高患者死亡率。早在 2020 年,我们就开发了一个名为“lncR2metasta”的人工 curated 数据库,为 CMEs 期间长 ncRNA(lncRNA)的调控提供了一个全面的存储库。我们通过从已发表的研究中进行彻底的人工 curation,补充了另外两种重要的 ncRNA 类型,microRNAs(miRNAs)和 circular RNAs(circRNAs),来更新这个数据库,因为它们在 CMEs 期间也有涉及。ncR2metasta 记录了 1565 个 lncRNA 相关、882 个 miRNA 相关和 628 个 circRNA 相关条目,涉及 63 个人类癌症亚型的 50 个 CMEs 中的 ncRNA-CME 关联。ncR2Met 具有简洁的 Web 界面,方便研究人员浏览、搜索和下载,以及提交新的 ncRNA-CME 关联。我们预计它将成为一个有价值的资源,这将极大地提高我们对 ncRNA 在转移中的功能的理解。它可在 http://ncr2met.wchoda.com 免费获取。

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