Gurdo Nicolás, Volke Daniel C, McCloskey Douglas, Nikel Pablo Iván
The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kongens, Lyngby, Denmark.
The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kongens, Lyngby, Denmark.
N Biotechnol. 2023 May 25;74:1-15. doi: 10.1016/j.nbt.2023.01.002. Epub 2023 Feb 1.
Automation is playing an increasingly significant role in synthetic biology. Groundbreaking technologies, developed over the past 20 years, have enormously accelerated the construction of efficient microbial cell factories. Integrating state-of-the-art tools (e.g. for genome engineering and analytical techniques) into the design-build-test-learn cycle (DBTLc) will shift the metabolic engineering paradigm from an almost artisanal labor towards a fully automated workflow. Here, we provide a perspective on how a fully automated DBTLc could be harnessed to construct the next-generation bacterial cell factories in a fast, high-throughput fashion. Innovative toolsets and approaches that pushed the boundaries in each segment of the cycle are reviewed to this end. We also present the most recent efforts on automation of the DBTLc, which heralds a fully autonomous pipeline for synthetic biology in the near future.
自动化在合成生物学中发挥着越来越重要的作用。过去20年中开发的突破性技术极大地加速了高效微生物细胞工厂的构建。将最先进的工具(如基因组工程和分析技术方面的工具)整合到设计-构建-测试-学习循环(DBTLc)中,将使代谢工程范式从几乎是手工劳动转变为完全自动化的工作流程。在此,我们阐述了如何利用完全自动化的DBTLc以快速、高通量的方式构建下一代细菌细胞工厂。为此,我们回顾了在循环的每个环节突破界限的创新工具集和方法。我们还介绍了DBTLc自动化方面的最新成果,这预示着在不久的将来合成生物学将拥有完全自主的流程。